RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA1108487", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Yanofskyibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Yanofskyibacteriota · 1 ✖

tax_clade 1

  • Bacteria candidate phyla · 1 ✖

bioproject 1

  • PRJNA1108487 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27880272 27880272 PRJNA1108487_P_NODE_10725_length_244_cov_0.912281_g10659_i0 PRJNA1108487 10725 244 0.912281 2.22596564 root 1 Root_unresolved Root_unresolved 74.3 2.84e-13   NR OGN00929.1 1802665 g10659 i0 38 3.1844262295082 92 40 94.7 2 4 234 152 241 OGN00929.1 MAG: hypothetical protein A2742_02690 [Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_01_FULL_43_32] diamond 777 74.3 1 Bacteria Bacteria candidate phyla   Candidatus Yanofskyibacteriota         Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_01_FULL_43_32

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;