RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

33 rows where bioproject = "PRJNA1108009" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_kingdom 2

tax_superkingdom 1

  • Archaea · 33 ✖

bioproject 1

  • PRJNA1108009 · 33 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4039985 4039985 PRJNA1108009_P_NODE_31184_length_242_cov_0.911243_g30866_i0 PRJNA1108009 31184 242 0.911243 2.20520806 uncultured Methanobrevibacter sp. 253161 Archaea Archaea 159 6.76e-46   NR WP_367242884.1 253161 g30866 i0 100 0.991735537190083 80 0 99.2 0 2 241 219 298 WP_367242884.1 acyltransferase [uncultured Methanobrevibacter sp.] diamond 240 159 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.
10416785 10416785 PRJNA1108009_P_NODE_8509_length_470_cov_0.775819_g8192_i0 PRJNA1108009 8509 470 0.775819 3.6463493 archaeon 1906665 Archaea Archaea 272 8.68e-88   NR MDP2434733.1 1906665 g8192 i0 84 0.995744680851064 156 24 99.6 1 468 1 165 319 MDP2434733.1 60S ribosomal protein L3 [archaeon] diamond 468 272 1 Archaea               archaeon
26750799 26750799 PRJNA1108009_P_NODE_20581_length_283_cov_1.185714_g20263_i0 PRJNA1108009 20581 283 1.185714 3.35557062 Methanobacteriota archaeon 2026739 Archaea Archaea 85.5 5.72e-17   NR HDH27971.1 2026739 g20263 i0 61.3 2.00353356890459 62 24 65.7 0 1 186 437 498 HDH27971.1 calcium-transporting P-type ATPase, PMR1-type [Methanobacteriota archaeon] diamond 567 85.5 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
26963940 26963940 PRJNA1108009_P_NODE_25442_length_250_cov_0.870056_g25124_i0 PRJNA1108009 25442 250 0.870056 2.17514 Methanocorpusculum 2192 Archaea Archaea 133 5e-38   NR HJJ94243.1 2058474 g25124 i0 100 2.664 74 0 88.8 0 3 224 67 140 HJJ94243.1 V-type ATP synthase subunit D [Methanocorpusculum sp.] diamond 666 133 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocorpusculaceae Methanocorpusculum Methanocorpusculum sp.
27216791 27216791 PRJNA1108009_P_NODE_31542_length_241_cov_0.916667_g31224_i0 PRJNA1108009 31542 241 0.916667 2.20916747 Methanocorpusculum 2192 Archaea Archaea 160 1.5199999999999996e-43   NR MBO5368776.1 2058474 g31224 i0 98.8 1.99170124481328 80 1 99.6 0 1 240 939 1018 MBO5368776.1 UvrD-helicase domain-containing protein [Methanocorpusculum sp.] diamond 480 160 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocorpusculaceae Methanocorpusculum Methanocorpusculum sp.
27352422 27352422 PRJNA1108009_P_NODE_23403_length_260_cov_1.411765_g23085_i0 PRJNA1108009 23403 260 1.411765 3.670589 Nanobdellota archaeon 2026764 Archaea Archaea 112 1.05e-26   NR MCA9485224.1 2026764 g23085 i0 60.5 0.992307692307692 86 34 99.2 0 258 1 271 356 MCA9485224.1 GTP-binding protein [Nanoarchaeota archaeon] diamond 258 112 1 Archaea   Nanobdellati Nanobdellota         Nanobdellota archaeon
27636527 27636527 PRJNA1108009_P_NODE_31744_length_241_cov_0.916667_g31426_i0 PRJNA1108009 31744 241 0.916667 2.20916747 Methanocorpusculum sp. 2058474 Archaea Archaea 139 1.1099999999999999e-39   NR MBO5430811.1 2058474 g31426 i0 97.2 0.896265560165975 72 2 89.6 0 218 3 1 72 MBO5430811.1 arginine decarboxylase, pyruvoyl-dependent [Methanocorpusculum sp.] diamond 216 139 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocorpusculaceae Methanocorpusculum Methanocorpusculum sp.
27731428 27731428 PRJNA1108009_P_NODE_27044_length_248_cov_0.880000_g26726_i0 PRJNA1108009 27044 248 0.88 2.1824 Methanoregulaceae archaeon 2485498 Archaea Archaea 55.1 6.89e-7   NR NTV00992.1 2485498 g26726 i0 69.2 1.1008064516129 39 11 46 1 247 134 20 58 NTV00992.1 uroporphyrinogen-III C-methyltransferase [Methanoregulaceae archaeon] diamond 273 55.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae   Methanoregulaceae archaeon
27731430 27731430 PRJNA1108009_P_NODE_28324_length_246_cov_0.890173_g28006_i0 PRJNA1108009 28324 246 0.890173 2.18982558 archaeon 1906665 Archaea Archaea 169 5.6e-49   NR MDP2436715.1 1906665 g28006 i0 93.9 1 82 5 100 0 246 1 220 301 MDP2436715.1 hypothetical protein [archaeon] diamond 246 169 1 Archaea               archaeon
27825933 27825933 PRJNA1108009_P_NODE_24564_length_251_cov_1.707865_g24246_i0 PRJNA1108009 24564 251 1.707865 4.28674115 Methanosphaera sp. 2666342 Archaea Archaea 135 3.69e-39   NR MEE3325253.1 2666342 g24246 i0 76.8 0.9800796812749 82 19 98 0 4 249 1 82 MEE3325253.1 hypothetical protein [Methanosphaera sp.] diamond 246 135 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp.
27920459 27920459 PRJNA1108009_P_NODE_21185_length_278_cov_1.502439_g20867_i0 PRJNA1108009 21185 278 1.502439 4.17678042 archaeon 1906665 Archaea Archaea 80.5 1.12e-16   NR RYG66539.1 1906665 g20867 i0 51.4 0.798561151079137 74 36 79.9 0 266 45 18 91 RYG66539.1 MAG: hypothetical protein EON64_09545 [archaeon] diamond 222 80.5 1 Archaea               archaeon
28101163 28101163 PRJNA1108009_P_NODE_31005_length_242_cov_0.911243_g30687_i0 PRJNA1108009 31005 242 0.911243 2.20520806 Methanocorpusculum 2192 Archaea Archaea 50.4 2.73e-5   NR HJJ41284.1 2058474 g30687 i0 100 1.48760330578512 20 0 24.8 0 241 182 145 164 HJJ41284.1 hypothetical protein [Methanocorpusculum sp.] diamond 360 50.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocorpusculaceae Methanocorpusculum Methanocorpusculum sp.
28267693 28267693 PRJNA1108009_P_NODE_27446_length_247_cov_0.885057_g27128_i0 PRJNA1108009 27446 247 0.885057 2.18609079 Methanobrevibacter smithii 2173 Archaea Archaea 41.6 0.013   NR WP_400216637.1 2173 g27128 i0 81.8 0.267206477732794 22 4 26.7 0 247 182 35 56 WP_400216637.1 hypothetical protein, partial [Methanobrevibacter smithii] diamond 66 41.6 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
28299373 28299373 PRJNA1108009_P_NODE_28326_length_246_cov_0.890173_g28008_i0 PRJNA1108009 28326 246 0.890173 2.18982558 Methanobrevibacter sp. 66852 Archaea Archaea 91.7 2.02e-19   NR WP_405288967.1 66852 g28008 i0 58 0.98780487804878 81 34 98.8 0 2 244 246 326 WP_405288967.1 Ig-like domain repeat protein [Methanobrevibacter sp.] diamond 243 91.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
28425861 28425861 PRJNA1108009_P_NODE_29526_length_244_cov_0.900585_g29208_i0 PRJNA1108009 29526 244 0.900585 2.1974274 archaeon 1906665 Archaea Archaea 155 9.45e-46   NR MDP2438364.1 1906665 g29208 i0 95 0.983606557377049 80 4 98.4 0 244 5 104 183 MDP2438364.1 protein kinase [archaeon] diamond 240 155 1 Archaea               archaeon
28615249 28615249 PRJNA1108009_P_NODE_12107_length_384_cov_1.485531_g11789_i0 PRJNA1108009 12107 384 1.485531 5.70443904 Nanobdellota archaeon 2026764 Archaea Archaea 162 1.98e-43   NR MCA9485224.1 2026764 g11789 i0 56.7 0.9921875 127 55 99.2 0 382 2 152 278 MCA9485224.1 GTP-binding protein [Nanoarchaeota archaeon] diamond 381 162 1 Archaea   Nanobdellati Nanobdellota         Nanobdellota archaeon
28646868 28646868 PRJNA1108009_P_NODE_9087_length_452_cov_2.000000_g8769_i0 PRJNA1108009 9087 452 2 9.04 archaeon 1906665 Archaea Archaea 80.1 8.42e-16   NR MDP2436403.1 1906665 g8769 i0 42.7 0.59070796460177 89 46 55.8 1 48 299 2 90 MDP2436403.1 hypothetical protein [archaeon] diamond 267 80.1 1 Archaea               archaeon
29278070 29278070 PRJNA1108009_P_NODE_29429_length_244_cov_0.900585_g29111_i0 PRJNA1108009 29429 244 0.900585 2.1974274 archaeon 1906665 Archaea Archaea 55.8 2.39e-7   NR MCQ2818627.1 1906665 g29111 i0 43.5 1.57377049180328 62 35 76.2 0 243 58 87 148 MCQ2818627.1 ER membrane protein complex subunit 4 [archaeon] diamond 384 55.8 1 Archaea               archaeon
29373002 29373002 PRJNA1108009_P_NODE_6609_length_540_cov_1.214133_g6296_i0 PRJNA1108009 6609 540 1.214133 6.5563182 archaeon 1906665 Archaea Archaea 71.2 8.24e-11   NR MDP2436838.1 1906665 g6296 i0 32.4 1.13333333333333 204 106 98.9 12 538 5 228 425 MDP2436838.1 inorganic diphosphatase [archaeon] diamond 612 71.2 1 Archaea               archaeon
29435787 29435787 PRJNA1108009_P_NODE_12190_length_383_cov_0.993548_g11872_i0 PRJNA1108009 12190 383 0.993548 3.80528884 Methanobrevibacter sp. 66852 Archaea Archaea 86.3 4.42e-17   NR WP_292806969.1 66852 g11872 i0 39.8 0.963446475195822 123 69 96.3 2 381 13 97 214 WP_292806969.1 WD40 repeat domain-containing protein [Methanobrevibacter sp.] diamond 369 86.3 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
29562273 29562273 PRJNA1108009_P_NODE_27330_length_247_cov_0.959770_g27012_i0 PRJNA1108009 27330 247 0.95977 2.3706319 archaeon 1906665 Archaea Archaea 115 1.73e-30   NR MDP2437245.1 1906665 g27012 i0 96.6 0.716599190283401 59 2 71.7 0 71 247 1 59 MDP2437245.1 Ras-related Rap1 family protein [archaeon] diamond 177 115 1 Archaea               archaeon
29593573 29593573 PRJNA1108009_P_NODE_14730_length_344_cov_1.136531_g14412_i0 PRJNA1108009 14730 344 1.136531 3.90966664 archaeon 1906665 Archaea Archaea 89.7 1.09e-20   NR RYH00022.1 1906665 g14412 i0 60 0.872093023255814 100 37 86.3 2 308 12 1 98 RYH00022.1 MAG: hypothetical protein EON65_49750 [archaeon] diamond 300 89.7 1 Archaea               archaeon
29878301 29878301 PRJNA1108009_P_NODE_27371_length_247_cov_0.885057_g27053_i0 PRJNA1108009 27371 247 0.885057 2.18609079 Candidatus Methanomethylophilaceae archaeon 2517205 Archaea Archaea 107 1.37e-26   NR MBO7205144.1 2517205 g27053 i0 81.7 0.728744939271255 60 11 72.9 0 181 2 1 60 MBO7205144.1 hypothetical protein [Candidatus Methanomethylophilaceae archaeon] diamond 180 107 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomethylophilaceae   Candidatus Methanomethylophilaceae archaeon
30825957 30825957 PRJNA1108009_P_NODE_20874_length_281_cov_0.990385_g20556_i0 PRJNA1108009 20874 281 0.990385 2.78298185 archaeon 1906665 Archaea Archaea 69.3 2.58e-11   NR RYH21652.1 1906665 g20556 i0 35.5 0.99288256227758 93 60 99.3 0 281 3 308 400 RYH21652.1 MAG: hypothetical protein EON65_20340 [archaeon] diamond 279 69.3 1 Archaea               archaeon
31110169 31110169 PRJNA1108009_P_NODE_25535_length_250_cov_0.870056_g25217_i0 PRJNA1108009 25535 250 0.870056 2.17514 uncultured archaeon MedDCM-OCT-S 115547 Archaea Archaea 42.4 0.0436   NR ADD93058.1 743088 g25217 i0 28.6 1.008 84 49 97.2 3 3 245 14 89 ADD93058.1 hypothetical protein [uncultured archaeon MedDCM-OCT-S05-C10] diamond 252 42.4 1 Archaea               uncultured archaeon MedDCM-OCT-S05-C10
31869293 31869293 PRJNA1108009_P_NODE_30477_length_243_cov_0.905882_g30159_i0 PRJNA1108009 30477 243 0.905882 2.20129326 archaeon 1906665 Archaea Archaea 119 4.85e-30   NR RYH30286.1 1906665 g30159 i0 74.1 1 81 21 100 0 1 243 35 115 RYH30286.1 MAG: hypothetical protein EON65_05580 [archaeon] diamond 243 119 1 Archaea               archaeon
31995987 31995987 PRJNA1108009_P_NODE_30858_length_242_cov_0.911243_g30540_i0 PRJNA1108009 30858 242 0.911243 2.20520806 Methanobrevibacter sp. 66852 Archaea Archaea 57 8.45e-8   NR MBO7731832.1 66852 g30540 i0 65.7 0.433884297520661 35 12 43.4 0 137 241 65 99 MBO7731832.1 hypothetical protein [Methanobrevibacter sp.] diamond 105 57 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
32439170 32439170 PRJNA1108009_P_NODE_11739_length_391_cov_0.867925_g11421_i0 PRJNA1108009 11739 391 0.867925 3.39358675 archaeon 1906665 Archaea Archaea 84.7 1.12e-16   NR RYH11026.1 1906665 g11421 i0 37 0.974424552429668 127 80 97.4 0 10 390 34 160 RYH11026.1 MAG: hypothetical protein EON65_39105 [archaeon] diamond 381 84.7 1 Archaea               archaeon
32470754 32470754 PRJNA1108009_P_NODE_23159_length_262_cov_1.544974_g22841_i0 PRJNA1108009 23159 262 1.544974 4.04783188 archaeon 1906665 Archaea Archaea 131 8.15e-36   NR RYG43733.1 1906665 g22841 i0 65.9 1.00763358778626 88 28 98.5 1 260 3 68 155 RYG43733.1 MAG: hypothetical protein EON67_12580 [archaeon] diamond 264 131 1 Archaea               archaeon
32597077 32597077 PRJNA1108009_P_NODE_12300_length_381_cov_1.000000_g11982_i0 PRJNA1108009 12300 381 1 3.81 archaeon 1906665 Archaea Archaea 162 2.75e-44   NR MDP2436245.1 1906665 g11982 i0 63 1 127 41 100 1 381 1 69 189 MDP2436245.1 MFS transporter [archaeon] diamond 381 162 1 Archaea               archaeon
32597088 32597088 PRJNA1108009_P_NODE_26100_length_249_cov_0.875000_g25782_i0 PRJNA1108009 26100 249 0.875 2.17875 Methanocorpusculum sp. 2058474 Archaea Archaea 160 9.82e-47   NR MBR4987154.1 2058474 g25782 i0 95.1 0.987951807228916 82 4 98.8 0 2 247 78 159 MBR4987154.1 ribose-phosphate diphosphokinase [Methanocorpusculum sp.] diamond 246 160 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocorpusculaceae Methanocorpusculum Methanocorpusculum sp.
32714170 32714170 PRJNA1108009_P_NODE_28100_length_246_cov_0.890173_g27782_i0 PRJNA1108009 28100 246 0.890173 2.18982558 root 1 Root_unresolved Root_unresolved 84 1.97e-17   NR MBS3072784.1 2026773 g27782 i0 46.9 5.89024390243902 81 42 97.6 1 2 241 38 118 MBS3072784.1 FkbM family methyltransferase [Candidatus Pacearchaeota archaeon] diamond 1449 84.3 0.99644128113879 Archaea Candidatus Pacearchaeota Nanobdellati           Candidatus Pacearchaeota archaeon
32817348 32817348 PRJNA1108009_P_NODE_26460_length_249_cov_0.875000_g26142_i0 PRJNA1108009 26460 249 0.875 2.17875 archaeon 1906665 Archaea Archaea 45.4 0.00433   NR RYG66180.1 1906665 g26142 i0 38.1 1.51807228915663 63 32 74.7 2 34 219 137 193 RYG66180.1 MAG: hypothetical protein EON64_10340 [archaeon] diamond 378 45.4 1 Archaea               archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;