RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1108009" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1108009 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28646862 28646862 PRJNA1108009_P_NODE_28387_length_246_cov_0.890173_g28069_i0 PRJNA1108009 28387 246 0.890173 2.18982558 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 44.7 0.00766   NR XP_067774100.1 135588 g28069 i0 34.7 0.914634146341463 75 45 86.6 1 215 3 20 94 XP_067774100.1 Glucokinase 1 [Histomonas meleagridis] diamond 225 44.7 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
32848808 32848808 PRJNA1108009_P_NODE_11280_length_399_cov_1.180982_g10962_i0 PRJNA1108009 11280 399 1.180982 4.71211818 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 127 2.8e-34   NR XP_068360038.1 1144522 g10962 i0 54.1 2.72932330827068 122 56 91.7 0 397 32 56 177 XP_068360038.1 40S ribosomal protein S9-1 [Tritrichomonas foetus] diamond 1089 127 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;