RNAquarium Metadata Server
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contig_metadata

17 rows where bioproject = "PRJNA1108009" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 17 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1108009 · 17 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13773781 13773781 PRJNA1108009_P_NODE_24491_length_252_cov_1.284916_g24173_i0 PRJNA1108009 24491 252 1.284916 3.23798832 Chondromyces 50 Bacteria Bacteria 377 3.32e-100   NTclustered gi|169977285|emb|AM946600.1| 52 g24173 i0 93.651 142.892857142857 252 16 100 0 1 252 1952 2203 Chondromyces crocatus ajudazol biosynthesis gene cluster, strain Cmc5 blastn 36009 377 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces crocatus
26678938 26678938 PRJNA1108009_P_NODE_16481_length_323_cov_0.924000_g16163_i0 PRJNA1108009 16481 323 0.924 2.98452 Pseudomonadati 3379134 Bacteria Bacteria 47 0.00292   NR MDD5307824.1 2026735 g16163 i0 44.2 2.1640866873065 52 29 48.3 0 317 162 160 211 MDD5307824.1 kelch repeat-containing protein [Deltaproteobacteria bacterium] diamond 699 47 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27216792 27216792 PRJNA1108009_P_NODE_31782_length_241_cov_0.916667_g31464_i0 PRJNA1108009 31782 241 0.916667 2.20916747 Pseudomonadati 3379134 Bacteria Bacteria 108 1.16e-26   NR HMY21013.1 57 g31464 i0 63.3 4.96680497925311 79 29 98.3 0 240 4 102 180 HMY21013.1 hypothetical protein [Polyangium sp.] diamond 1197 108 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium sp.
27636521 27636521 PRJNA1108009_P_NODE_28264_length_246_cov_0.890173_g27946_i0 PRJNA1108009 28264 246 0.890173 2.18982558 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 40.4 0.0364   NR MBV5337252.1 2026735 g27946 i0 42.3 0.634146341463415 52 27 63.4 2 3 158 2 50 MBV5337252.1 ankyrin repeat domain-containing protein [Deltaproteobacteria bacterium] diamond 156 40.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27794411 27794411 PRJNA1108009_P_NODE_28364_length_246_cov_0.890173_g28046_i0 PRJNA1108009 28364 246 0.890173 2.18982558 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 50.1 1.24e-5   NR MBM4313495.1 2026735 g28046 i0 33.3 0.731707317073171 60 39 72 1 201 25 36 95 MBM4313495.1 barstar family protein [Deltaproteobacteria bacterium] diamond 180 50.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28078336 28078336 PRJNA1108009_P_NODE_29085_length_245_cov_0.895349_g28767_i0 PRJNA1108009 29085 245 0.895349 2.19360505 Myxococcus sp. XM-1-1-1 2874602 Bacteria Bacteria 42.7 0.0373   NR WP_223751411.1 2874602 g28767 i0 33.3 0.881632653061225 72 42 80.8 2 245 48 127 198 WP_223751411.1 hypothetical protein [Myxococcus sp. XM-1-1-1] diamond 216 42.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus sp. XM-1-1-1
28173034 28173034 PRJNA1108009_P_NODE_23846_length_257_cov_0.994565_g23528_i0 PRJNA1108009 23846 257 0.994565 2.5560320500000002 Anaeromyxobacter sp. 1872521 Bacteria Bacteria 51.6 3.34e-5   NR HEY6005564.1 1872521 g23528 i0 36 1.03891050583658 89 45 95.7 4 255 10 40 123 HEY6005564.1 Ig-like domain-containing protein [Anaeromyxobacter sp.] diamond 267 51.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter sp.
28488937 28488937 PRJNA1108009_P_NODE_20367_length_285_cov_0.877358_g20049_i0 PRJNA1108009 20367 285 0.877358 2.5004703 Polyangia bacterium 3058050 Bacteria Bacteria 59.7 6.6e-8   NR HMF42392.1 3058050 g20049 i0 64.1 0.957894736842105 39 14 41.1 0 244 128 6 44 HMF42392.1 DUF1592 domain-containing protein [Polyangia bacterium] diamond 273 59.7 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium
28804396 28804396 PRJNA1108009_P_NODE_29968_length_243_cov_1.541176_g29650_i0 PRJNA1108009 29968 243 1.541176 3.74505768 Cystobacter ferrugineus 83449 Bacteria Bacteria 84.7 1.26e-17   NR WP_084736591.1 83449 g29650 i0 52.4 1.01234567901235 82 37 98.8 1 4 243 81 162 WP_084736591.1 YdcF family protein [Cystobacter ferrugineus] diamond 246 84.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter ferrugineus
28962729 28962729 PRJNA1108009_P_NODE_12748_length_372_cov_1.906355_g12430_i0 PRJNA1108009 12748 372 1.906355 7.0916406 Sorangium cellulosum 56 Bacteria Bacteria 44.7 0.0327   NR WP_020732738.1 56 g12430 i0 44 0.403225806451613 50 27 40.3 1 73 222 415 463 WP_020732738.1 serine/threonine-protein kinase [Sorangium cellulosum] diamond 150 44.7 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
29309749 29309749 PRJNA1108009_P_NODE_27309_length_247_cov_1.149425_g26991_i0 PRJNA1108009 27309 247 1.149425 2.83907975 Archangium sp. 1872627 Bacteria Bacteria 85.9 8.11e-18   NR HEY0095906.1 1872627 g26991 i0 52.4 3.95951417004049 82 35 99.6 1 247 2 232 309 HEY0095906.1 LysM peptidoglycan-binding domain-containing protein [Archangium sp.] diamond 978 85.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.
29972915 29972915 PRJNA1108009_P_NODE_14531_length_346_cov_1.780220_g14213_i0 PRJNA1108009 14531 346 1.78022 6.1595612 Polyangiaceae bacterium 2268199 Bacteria Bacteria 70.1 3.21e-11   NR NUQ72474.1 2268199 g14213 i0 46 0.754335260115607 87 46 75.4 1 300 40 90 175 NUQ72474.1 hypothetical protein [Polyangiaceae bacterium] diamond 261 70.1 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
30478542 30478542 PRJNA1108009_P_NODE_11493_length_395_cov_1.201863_g11175_i0 PRJNA1108009 11493 395 1.201863 4.74735885 Myxococcota bacterium 2818507 Bacteria Bacteria 55.8 5.6e-6   NR MEW5847593.1 2818507 g11175 i0 40 0.911392405063291 120 63 89.6 8 40 393 809 921 MEW5847593.1 hypothetical protein [Myxococcota bacterium] diamond 360 55.8 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
30636233 30636233 PRJNA1108009_P_NODE_27173_length_248_cov_0.880000_g26855_i0 PRJNA1108009 27173 248 0.88 2.1824 Myxococcota bacterium 2818507 Bacteria Bacteria 53.5 6.44e-6   NR MEW5847593.1 2818507 g26855 i0 43.4 1.875 76 39 91.9 2 1 228 1085 1156 MEW5847593.1 hypothetical protein [Myxococcota bacterium] diamond 465 53.5 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
31015568 31015568 PRJNA1108009_P_NODE_27115_length_248_cov_0.880000_g26797_i0 PRJNA1108009 27115 248 0.88 2.1824 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 45.1 0.00575   NR MCP4664832.1 2026735 g26797 i0 29.2 0.870967741935484 72 51 87.1 0 243 28 101 172 MCP4664832.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 216 45.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31679459 31679459 PRJNA1108009_P_NODE_9757_length_434_cov_1.706371_g9439_i0 PRJNA1108009 9757 434 1.706371 7.40565014 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 50.8 3.72e-4   NR MCB9737160.1 2026735 g9439 i0 48.9 0.324884792626728 47 24 32.5 0 431 291 3 49 MCB9737160.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 141 50.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31837568 31837568 PRJNA1108009_P_NODE_31137_length_242_cov_0.911243_g30819_i0 PRJNA1108009 31137 242 0.911243 2.20520806 Myxococcales bacterium 2026763 Bacteria Bacteria 61.2 1.1e-8   NR MCB9640167.1 2026763 g30819 i0 61.9 2.08264462809917 42 16 52.1 0 240 115 538 579 MCB9640167.1 ATP-binding cassette domain-containing protein [Myxococcales bacterium] diamond 504 61.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;