RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1108009" and tax_phylum = "Heterolobosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1108009 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3571056 3571056 PRJNA1108009_P_NODE_27463_length_247_cov_0.885057_g27145_i0 PRJNA1108009 27463 247 0.885057 2.18609079 Naegleria 5761 Heterolobosea other_Eukaryota 109 1.4900000000000002e-27   NR XP_002669988.1 5762 g27145 i0 61.5 2.42914979757085 78 28 94.7 1 245 12 159 234 XP_002669988.1 uncharacterized protein NAEGRDRAFT_81995 [Naegleria gruberi] diamond 600 109 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
12499358 12499358 PRJNA1108009_P_NODE_30230_length_243_cov_0.905882_g29912_i0 PRJNA1108009 30230 243 0.905882 2.20129326 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 52.8 0.022   NTclustered gi|2124385695|ref|XM_044707696.1| 5763 g29912 i0 100 0.345679012345679 28 0 12 0 216 243 56 29 Naegleria fowleri uncharacterized protein (FDP41_004298), partial mRNA blastn 84 52.8 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
27699869 27699869 PRJNA1108009_P_NODE_31544_length_241_cov_0.916667_g31226_i0 PRJNA1108009 31544 241 0.916667 2.20916747 Acrasis kona 1008807 Heterolobosea other_Eukaryota 110 2.65e-28   NR KAL0479481.1 1008807 g31226 i0 64.6 0.983402489626556 79 28 98.3 0 238 2 92 170 KAL0479481.1 hypothetical protein AKO1_007662 [Acrasis kona] diamond 237 110 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
27974977 27974977 PRJNA1108009_P_NODE_26725_length_248_cov_0.880000_g26407_i0 PRJNA1108009 26725 248 0.88 2.1824 Naegleria 5761 Heterolobosea other_Eukaryota 90.9 4.49e-19   NR CAG4716137.1 5763 g26407 i0 51.2 2.9758064516129 82 40 99.2 0 246 1 194 275 CAG4716137.1 unnamed protein product [Naegleria fowleri] diamond 738 91.7 0.991275899672846 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
28006802 28006802 PRJNA1108009_P_NODE_25905_length_249_cov_1.363636_g25587_i0 PRJNA1108009 25905 249 1.363636 3.39545364 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 62 6.64e-9   NR XP_002674316.1 5762 g25587 i0 41.8 7.27710843373494 67 39 80.7 0 234 34 511 577 XP_002674316.1 uncharacterized protein NAEGRDRAFT_70664 [Naegleria gruberi] diamond 1812 62 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
32303929 32303929 PRJNA1108009_P_NODE_19739_length_289_cov_2.018519_g19421_i0 PRJNA1108009 19739 289 2.018519 5.83351991 root 1 Root_unresolved Root_unresolved 120 2.16e-29   NR XP_002678850.1 5762 g19421 i0 54.7 11.6885813148789 95 43 98.6 0 285 1 244 338 XP_002678850.1 myo-inositol 1-phosphate synthase [Naegleria gruberi] diamond 3378 120 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;