RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1108009" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1108009 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8673670 8673670 PRJNA1108009_P_NODE_15947_length_329_cov_0.902344_g15629_i0 PRJNA1108009 15947 329 0.902344 2.96871176 Fibrobacter sp. 35828 Bacteria Bacteria 132 7.45e-34   NR NLL12130.1 35828 g15629 i0 66.7 21.419452887538 96 30 87.5 1 288 1 7 100 NLL12130.1 UDP-glucose 6-dehydrogenase [Fibrobacter sp.] diamond 7047 132 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
29088865 29088865 PRJNA1108009_P_NODE_30188_length_243_cov_0.905882_g29870_i0 PRJNA1108009 30188 243 0.905882 2.20129326 Fibrobacteraceae bacterium 2652288 Bacteria Bacteria 162 5.479999999999998e-48   NR MEE1067281.1 2652288 g29870 i0 100 1 81 0 100 0 1 243 140 220 MEE1067281.1 hypothetical protein [Fibrobacteraceae bacterium] diamond 243 162 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae   Fibrobacteraceae bacterium
30762910 30762910 PRJNA1108009_P_NODE_28274_length_246_cov_0.890173_g27956_i0 PRJNA1108009 28274 246 0.890173 2.18982558 Fibrobacter intestinalis 28122 Bacteria Bacteria 97.1 3.47e-22   NR WP_143159312.1 28122 g27956 i0 97.8 0.560975609756098 46 1 56.1 0 2 139 244 289 WP_143159312.1 hypothetical protein [Fibrobacter intestinalis] diamond 138 97.1 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter intestinalis
32534021 32534021 PRJNA1108009_P_NODE_19699_length_290_cov_1.069124_g19381_i0 PRJNA1108009 19699 290 1.069124 3.1004596 Fibrobacteraceae bacterium 2652288 Bacteria Bacteria 192 4.46e-61   NR MBO5422442.1 2652288 g19381 i0 97.9 0.993103448275862 96 2 99.3 0 289 2 28 123 MBO5422442.1 hypothetical protein [Fibrobacteraceae bacterium] diamond 288 192 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae   Fibrobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;