RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1108009", tax_kingdom = "Fungi" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1108009 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28732838 28732838 PRJNA1108009_P_NODE_24067_length_255_cov_1.269231_g23749_i0 PRJNA1108009 24067 255 1.269231 3.23653905 Fungi 4751 Fungi Fungi 106 1.7600000000000002e-26   NR KAI9216776.1 64508 g23749 i0 67.9 3 84 26 98.8 1 2 253 105 187 KAI9216776.1 ribosomal protein S8e/ribosomal biogenesis NSA2 [Blastocladiella britannica] diamond 765 106 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella britannica
31395051 31395051 PRJNA1108009_P_NODE_23136_length_262_cov_1.629630_g22818_i0 PRJNA1108009 23136 262 1.62963 4.2696306 Blastocladiella britannica 64508 Fungi Fungi 68.9 1.36e-11   NR KAI9218039.1 64508 g22818 i0 64.3 1.88931297709924 70 25 80.2 0 47 256 18 87 KAI9218039.1 40S ribosomal protein s2 [Blastocladiella britannica] diamond 495 68.9 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella britannica
32027629 32027629 PRJNA1108009_P_NODE_28238_length_246_cov_0.890173_g27920_i0 PRJNA1108009 28238 246 0.890173 2.18982558 Coelomomyces lativittatus 945690 Fungi Fungi 48.9 2.36e-4   NR KAJ1505424.1 945690 g27920 i0 55 1.4390243902439 60 18 73.2 2 38 217 98 148 KAJ1505424.1 hypothetical protein HMI56_001136 [Coelomomyces lativittatus] diamond 354 48.9 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Coelomomycetaceae Coelomomyces Coelomomyces lativittatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;