RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1108009", tax_kingdom = "Bacillati" and tax_phylum = "Chloroflexota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJNA1108009 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14241937 14241937 PRJNA1108009_P_NODE_28472_length_246_cov_0.890173_g28154_i0 PRJNA1108009 28472 246 0.890173 2.18982558 Chloroflexota bacterium 2026724 Bacteria Bacteria 56.5 0.002   NTclustered gi|2621701252|emb|OY759972.1| 2026724 g28154 i0 100 0.121951219512195 30 0 12 0 33 62 2271304 2271333 MAG: Chloroflexota bacterium isolate 55c93f92-7b64-48b2-973a-1fcfb2e6d712 genome assembly, chromosome: 1 blastn 30 56.5 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
27415623 27415623 PRJNA1108009_P_NODE_2083_length_937_cov_1.615741_g1840_i0 PRJNA1108009 2083 937 1.615741 15.13949317 Caldilineaceae bacterium 2614250 Bacteria Bacteria 76.6 2.77e-11   NR MBX2997503.1 2614250 g1840 i0 30.4 0.864461045891142 270 155 82.3 12 146 916 152 401 MBX2997503.1 DUF11 domain-containing protein [Caldilineaceae bacterium] diamond 810 76.6 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae   Caldilineaceae bacterium
31733949 31733949 PRJNA1108009_P_NODE_6597_length_540_cov_1.659529_g6284_i0 PRJNA1108009 6597 540 1.659529 8.9614566 Bacteria 2 Bacteria Bacteria 144 1.4e-36   NR CAA9243407.1 1672391 g6284 i0 62.7 10.4777777777778 102 38 56.7 0 306 1 15 116 CAA9243407.1 MAG: Phosphoenolpyruvate carboxykinase [GTP] [uncultured Chloroflexia bacterium] diamond 5658 145 0.993103448275862 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
32335513 32335513 PRJNA1108009_P_NODE_20699_length_282_cov_1.392344_g20381_i0 PRJNA1108009 20699 282 1.392344 3.92641008 Bacteria 2 Bacteria Bacteria 43.9 0.02   NR MFM2106803.1 2026724 g20381 i0 50 3.4468085106383 44 19 46.8 1 187 56 58 98 MFM2106803.1 hypothetical protein [Chloroflexota bacterium] diamond 972 44.3 0.99097065462754 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;