RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1108009" and tax_clade = "Stenosarchaea group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 6 ✖

bioproject 1

  • PRJNA1108009 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26963940 26963940 PRJNA1108009_P_NODE_25442_length_250_cov_0.870056_g25124_i0 PRJNA1108009 25442 250 0.870056 2.17514 Methanocorpusculum 2192 Archaea Archaea 133 5e-38   NR HJJ94243.1 2058474 g25124 i0 100 2.664 74 0 88.8 0 3 224 67 140 HJJ94243.1 V-type ATP synthase subunit D [Methanocorpusculum sp.] diamond 666 133 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocorpusculaceae Methanocorpusculum Methanocorpusculum sp.
27216791 27216791 PRJNA1108009_P_NODE_31542_length_241_cov_0.916667_g31224_i0 PRJNA1108009 31542 241 0.916667 2.20916747 Methanocorpusculum 2192 Archaea Archaea 160 1.5199999999999996e-43   NR MBO5368776.1 2058474 g31224 i0 98.8 1.99170124481328 80 1 99.6 0 1 240 939 1018 MBO5368776.1 UvrD-helicase domain-containing protein [Methanocorpusculum sp.] diamond 480 160 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocorpusculaceae Methanocorpusculum Methanocorpusculum sp.
27636527 27636527 PRJNA1108009_P_NODE_31744_length_241_cov_0.916667_g31426_i0 PRJNA1108009 31744 241 0.916667 2.20916747 Methanocorpusculum sp. 2058474 Archaea Archaea 139 1.1099999999999999e-39   NR MBO5430811.1 2058474 g31426 i0 97.2 0.896265560165975 72 2 89.6 0 218 3 1 72 MBO5430811.1 arginine decarboxylase, pyruvoyl-dependent [Methanocorpusculum sp.] diamond 216 139 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocorpusculaceae Methanocorpusculum Methanocorpusculum sp.
27731428 27731428 PRJNA1108009_P_NODE_27044_length_248_cov_0.880000_g26726_i0 PRJNA1108009 27044 248 0.88 2.1824 Methanoregulaceae archaeon 2485498 Archaea Archaea 55.1 6.89e-7   NR NTV00992.1 2485498 g26726 i0 69.2 1.1008064516129 39 11 46 1 247 134 20 58 NTV00992.1 uroporphyrinogen-III C-methyltransferase [Methanoregulaceae archaeon] diamond 273 55.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae   Methanoregulaceae archaeon
28101163 28101163 PRJNA1108009_P_NODE_31005_length_242_cov_0.911243_g30687_i0 PRJNA1108009 31005 242 0.911243 2.20520806 Methanocorpusculum 2192 Archaea Archaea 50.4 2.73e-5   NR HJJ41284.1 2058474 g30687 i0 100 1.48760330578512 20 0 24.8 0 241 182 145 164 HJJ41284.1 hypothetical protein [Methanocorpusculum sp.] diamond 360 50.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocorpusculaceae Methanocorpusculum Methanocorpusculum sp.
32597088 32597088 PRJNA1108009_P_NODE_26100_length_249_cov_0.875000_g25782_i0 PRJNA1108009 26100 249 0.875 2.17875 Methanocorpusculum sp. 2058474 Archaea Archaea 160 9.82e-47   NR MBR4987154.1 2058474 g25782 i0 95.1 0.987951807228916 82 4 98.8 0 2 247 78 159 MBR4987154.1 ribose-phosphate diphosphokinase [Methanocorpusculum sp.] diamond 246 160 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocorpusculaceae Methanocorpusculum Methanocorpusculum sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;