RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1108009", tax_clade = "Sar" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1108009 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11691770 11691770 PRJNA1108009_P_NODE_25910_length_249_cov_1.312500_g25592_i0 PRJNA1108009 25910 249 1.3125 3.268125 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 123 9.07e-31   NR ETO21496.1 46433 g25592 i0 64.6 1.97590361445783 82 29 98.8 0 4 249 292 373 ETO21496.1 hypothetical protein RFI_15702 [Reticulomyxa filosa] diamond 492 123 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
27383893 27383893 PRJNA1108009_P_NODE_29563_length_244_cov_0.900585_g29245_i0 PRJNA1108009 29563 244 0.900585 2.1974274 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 82.4 6.55e-17   NR ETO23606.1 46433 g29245 i0 51.9 0.971311475409836 79 38 97.1 0 242 6 92 170 ETO23606.1 hypothetical protein RFI_13572 [Reticulomyxa filosa] diamond 237 82.4 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
31670824 31670824 PRJNA1108009_P_NODE_30337_length_243_cov_0.905882_g30019_i0 PRJNA1108009 30337 243 0.905882 2.20129326 Viridiplantae 33090 SAR_Eukaryotes SAR_Eukaryotes 100 2.34e-24   NR ETO25316.1 46433 g30019 i0 64.9 5.77777777777778 74 26 91.4 0 222 1 46 119 ETO25316.1 hypothetical protein RFI_11824 [Reticulomyxa filosa] diamond 1404 101 0.99009900990099 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;