RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1108009", tax_clade = "Sar" and tax_phylum = "Cercozoa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1108009 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1487411 1487411 PRJNA1108009_P_NODE_12942_length_369_cov_1.543919_g12624_i0 PRJNA1108009 12942 369 1.543919 5.69706111 Thaumatomonas sp. TMT002 407209 SAR_Eukaryotes SAR_Eukaryotes 250 1.16e-61   NTclustered gi|116222286|gb|DQ980529.1| 407209 g12624 i0 79.189 82.5772357723577 370 69 99 7 1 366 685 1050 Thaumatomonas sp. TMT002 beta tubulin gene, partial cds blastn 30471 250 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida Thaumatomastigidae Thaumatomonas Thaumatomonas sp. TMT002
4039908 4039908 PRJNA1108009_P_NODE_27964_length_246_cov_1.335260_g27646_i0 PRJNA1108009 27964 246 1.33526 3.2847396 Chlorarachnion reptans 29199 SAR_Eukaryotes SAR_Eukaryotes 126 1.59e-34   NR CAH55610.1 29199 g27646 i0 85.2 1.97560975609756 81 12 98.8 0 243 1 18 98 CAH55610.1 proton-translocating inorganic pyrophosphatase Ib, partial [Chlorarachnion reptans] diamond 486 126 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Chlorarachnion Chlorarachnion reptans
11691800 11691800 PRJNA1108009_P_NODE_27390_length_247_cov_0.885057_g27072_i0 PRJNA1108009 27390 247 0.885057 2.18609079 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 451 1.88e-122   NTclustered gi|238617602|gb|FJ973377.1| 188950 g27072 i0 99.595 77.2591093117409 247 1 100 0 1 247 2981 2735 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 19083 451 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;