RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

29 rows where bioproject = "PRJNA1108009", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 29 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 29 ✖

bioproject 1

  • PRJNA1108009 · 29 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
213053 213053 PRJNA1108009_P_NODE_26001_length_249_cov_0.875000_g25683_i0 PRJNA1108009 26001 249 0.875 2.17875 Nematoda sp. RS-2017 2020970 Nematoda Nematoda 309 1.21e-79   NTclustered gi|1235052990|gb|KX372289.1| 2020970 g25683 i0 90.254 97.6787148594377 236 23 95 0 14 249 2 237 Nematoda sp. RS-2017 isolate VdBRL2014_v1 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial blastn 24322 309 1 Eukaryota Opisthokonta Metazoa Nematoda         Nematoda sp. RS-2017
213140 213140 PRJNA1108009_P_NODE_29641_length_244_cov_0.900585_g29323_i0 PRJNA1108009 29641 244 0.900585 2.1974274 Mesorhabditis spiculigera 96644 Nematoda Nematoda 115 6.659999999999999e-28   NR CAJ0583552.1 96644 g29323 i0 63.3 1.93032786885246 79 28 95.9 1 9 242 44 122 CAJ0583552.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 471 115 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera
1487651 1487651 PRJNA1108009_P_NODE_21802_length_273_cov_1.530000_g21484_i0 PRJNA1108009 21802 273 1.53 4.1769 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 148 2.2599999999999996e-41   NR KRY42289.1 6334 g21484 i0 90.1 1593.8021978022 91 9 100 0 1 273 218 308 KRY42289.1 histone H3, partial [Trichinella spiralis] diamond 435108 149 0.993288590604027 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
6591260 6591260 PRJNA1108009_P_NODE_29466_length_244_cov_0.900585_g29148_i0 PRJNA1108009 29466 244 0.900585 2.1974274 Brugia malayi 6279 Nematoda Nematoda 154 5.87e-33   NTclustered gi|2082294922|ref|XM_043074808.1| 6279 g29148 i0 82.941 0.69672131147541 170 29 70 0 27 196 1659 1490 Brugia malayi ATP-citrate synthase, putative (Bm1778), partial mRNA blastn 170 154 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
7865961 7865961 PRJNA1108009_P_NODE_31127_length_242_cov_0.911243_g30809_i0 PRJNA1108009 31127 242 0.911243 2.20520806 Rhabditida 6236 Nematoda Nematoda 156 1.6699999999999999e-43   NR KAH7731566.1 70226 g30809 i0 95 8.92561983471074 80 4 99.2 0 242 3 312 391 KAH7731566.1 hypothetical protein AAVH_00464 [Aphelenchoides avenae] diamond 2160 156 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae
9140942 9140942 PRJNA1108009_P_NODE_7288_length_510_cov_3.977117_g6973_i0 PRJNA1108009 7288 510 3.977117 20.2832967 Pristionchus pauli 376545 Nematoda Nematoda 292 2.7e-74   NTclustered gi|150982019|gb|EF634598.1| 376545 g6973 i0 81.492 4.42352941176471 362 61 70 6 70 428 37 395 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 2256 292 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli
12967056 12967056 PRJNA1108009_P_NODE_31691_length_241_cov_0.916667_g31373_i0 PRJNA1108009 31691 241 0.916667 2.20916747 Panagrolaimus sp. PS1579 310962 Nematoda Nematoda 291 4.22e-74   NTclustered gi|2752116812|emb|OZ077771.1| 310962 g31373 i0 88.655 67.8589211618257 238 27 99 0 1 238 8397 8160 Panagrolaimus sp. PS1579 genome assembly, organelle: mitochondrion blastn 16354 291 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Panagrolaimus Panagrolaimus sp. PS1579
14241790 14241790 PRJNA1108009_P_NODE_22252_length_269_cov_1.948980_g21934_i0 PRJNA1108009 22252 269 1.94898 5.2427562 Caenorhabditis 6237 Nematoda Nematoda 148 1.22e-39   NR CAI5446164.1 860376 g21934 i0 75.3 23.5650557620818 89 22 99.3 0 268 2 284 372 CAI5446164.1 unnamed protein product [Caenorhabditis angaria] diamond 6339 149 0.993288590604027 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis angaria
18064491 18064491 PRJNA1108009_P_NODE_17195_length_314_cov_3.373444_g16877_i0 PRJNA1108009 17195 314 3.373444 10.59261416 Pristionchus hoplostomus 1355913 Nematoda Nematoda 167 1.01e-36   NTclustered gi|524845312|gb|KC819366.1| 1355913 g16877 i0 81.166 42.4777070063694 223 28 69 11 32 247 264 49 Pristionchus hoplostomus strain JU1090 subunit ribosomal protein 20 (rps-20) mRNA, partial cds blastn 13338 167 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus hoplostomus
26783046 26783046 PRJNA1108009_P_NODE_19401_length_292_cov_1.776256_g19083_i0 PRJNA1108009 19401 292 1.776256 5.18666752 Pristionchus fissidentatus 1538716 Nematoda Nematoda 74.3 1.94e-14   NR GMT34741.1 1538716 g19083 i0 42.3 1.81849315068493 104 50 96.6 2 282 1 36 139 GMT34741.1 hypothetical protein PFISCL1PPCAC_26038, partial [Pristionchus fissidentatus] diamond 531 74.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
26783053 26783053 PRJNA1108009_P_NODE_22201_length_270_cov_1.172589_g21883_i0 PRJNA1108009 22201 270 1.172589 3.1659903 Anisakis simplex 6269 Nematoda Nematoda 58.9 7.36e-9   NR VDK28727.1 6269 g21883 i0 44.8 0.744444444444444 67 34 71.1 1 194 3 31 97 VDK28727.1 unnamed protein product [Anisakis simplex] diamond 201 58.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anisakidae Anisakis Anisakis simplex
26941020 26941020 PRJNA1108009_P_NODE_11682_length_392_cov_0.965517_g11364_i0 PRJNA1108009 11682 392 0.965517 3.78482664 Heterodera trifolii 157864 Nematoda Nematoda 92.8 1.35e-19   NR KAL3073343.1 157864 g11364 i0 43.4 2.4030612244898 106 60 81.1 0 3 320 161 266 KAL3073343.1 hypothetical protein niasHT_038700 [Heterodera trifolii] diamond 942 92.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera trifolii
27004335 27004335 PRJNA1108009_P_NODE_29862_length_244_cov_0.900585_g29544_i0 PRJNA1108009 29862 244 0.900585 2.1974274 Ditylenchus destructor 166010 Nematoda Nematoda 162 1.68e-44   NR KAI1733274.1 166010 g29544 i0 88.8 5.9016393442623 80 9 98.4 0 3 242 275 354 KAI1733274.1 glu/Leu/Phe/Val dehydrogenase, dimerization domain-containing protein [Ditylenchus destructor] diamond 1440 162 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anguinidae Ditylenchus Ditylenchus destructor
27067626 27067626 PRJNA1108009_P_NODE_31682_length_241_cov_0.916667_g31364_i0 PRJNA1108009 31682 241 0.916667 2.20916747 Oesophagostomum dentatum 61180 Nematoda Nematoda 87.4 2.2e-18   NR KHJ88216.1 61180 g31364 i0 37.3 3.80912863070539 102 40 99.6 2 1 240 107 206 KHJ88216.1 lectin C-type domain protein [Oesophagostomum dentatum] diamond 918 87.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Oesophagostomum Oesophagostomum dentatum
27857338 27857338 PRJNA1108009_P_NODE_29545_length_244_cov_0.900585_g29227_i0 PRJNA1108009 29545 244 0.900585 2.1974274 Halicephalobus sp. NKZ332 2598192 Nematoda Nematoda 59.3 5.29e-8   NR KAE9552485.1 2598192 g29227 i0 38.8 0.983606557377049 80 49 98.4 0 242 3 603 682 KAE9552485.1 hypothetical protein FO519_004298 [Halicephalobus sp. NKZ332] diamond 240 59.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus sp. NKZ332
28109843 28109843 PRJNA1108009_P_NODE_27025_length_248_cov_0.880000_g26707_i0 PRJNA1108009 27025 248 0.88 2.1824 Diploscapter pachys 2018661 Nematoda Nematoda 157 2.0399999999999998e-47   NR PAV60132.1 2018661 g26707 i0 100 0.919354838709677 76 0 91.9 0 19 246 1 76 PAV60132.1 hypothetical protein WR25_18496 [Diploscapter pachys] diamond 228 157 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys
28173027 28173027 PRJNA1108009_P_NODE_11426_length_396_cov_1.585139_g11108_i0 PRJNA1108009 11426 396 1.585139 6.27715044 Heterodera trifolii 157864 Nematoda Nematoda 107 4.13e-25   NR KAL3073343.1 157864 g11108 i0 45.2 0.954545454545455 126 69 95.5 0 395 18 141 266 KAL3073343.1 hypothetical protein niasHT_038700 [Heterodera trifolii] diamond 378 107 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera trifolii
28741484 28741484 PRJNA1108009_P_NODE_28447_length_246_cov_0.890173_g28129_i0 PRJNA1108009 28447 246 0.890173 2.18982558 Steinernema hermaphroditum 289476 Nematoda Nematoda 72 1.87e-12   NR KAK0417876.1 289476 g28129 i0 47.5 1.95121951219512 80 40 97.6 1 2 241 122 199 KAK0417876.1 hypothetical protein QR680_013253 [Steinernema hermaphroditum] diamond 480 72 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema hermaphroditum
30193969 30193969 PRJNA1108009_P_NODE_29772_length_244_cov_0.900585_g29454_i0 PRJNA1108009 29772 244 0.900585 2.1974274 Halicephalobus sp. NKZ332 2598192 Nematoda Nematoda 101 9.02e-26   NR KAE9549445.1 2598192 g29454 i0 100 0.602459016393443 49 0 60.2 0 244 98 51 99 KAE9549445.1 hypothetical protein FO519_007339 [Halicephalobus sp. NKZ332] diamond 147 101 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus sp. NKZ332
30699516 30699516 PRJNA1108009_P_NODE_30714_length_242_cov_0.911243_g30396_i0 PRJNA1108009 30714 242 0.911243 2.20520806 Halicephalobus sp. NKZ332 2598192 Nematoda Nematoda 45.1 0.00575   NR KAE9556115.1 2598192 g30396 i0 47.1 0.632231404958678 51 26 63.2 1 155 3 641 690 KAE9556115.1 hypothetical protein FO519_000603 [Halicephalobus sp. NKZ332] diamond 153 45.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus sp. NKZ332
30731174 30731174 PRJNA1108009_P_NODE_30334_length_243_cov_0.905882_g30016_i0 PRJNA1108009 30334 243 0.905882 2.20129326 Necator americanus 51031 Nematoda Nematoda 85.5 3.28e-17   NR XP_064063993.1 51031 g30016 i0 46.2 2.88888888888889 78 42 96.3 0 235 2 479 556 XP_064063993.1 hypothetical protein RB195_021398 [Necator americanus] diamond 702 85.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
30857498 30857498 PRJNA1108009_P_NODE_24734_length_251_cov_0.865169_g24416_i0 PRJNA1108009 24734 251 0.865169 2.17157419 Halicephalobus sp. NKZ332 2598192 Nematoda Nematoda 123 2.13e-30   NR KAE9548530.1 2598192 g24416 i0 66.3 0.99203187250996006 83 28 99.2 0 2 250 308 390 KAE9548530.1 hypothetical protein FO519_008255 [Halicephalobus sp. NKZ332] diamond 249 123 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus sp. NKZ332
30920990 30920990 PRJNA1108009_P_NODE_27074_length_248_cov_0.880000_g26756_i0 PRJNA1108009 27074 248 0.88 2.1824 Aphelenchoides besseyi 269767 Nematoda Nematoda 51.2 4.02e-5   NR KAI6180025.1 269767 g26756 i0 34.2 1.83870967741935 76 50 91.9 0 233 6 285 360 KAI6180025.1 hypothetical protein M3Y98_00674700 [Aphelenchoides besseyi] diamond 456 51.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides besseyi
31204698 31204698 PRJNA1108009_P_NODE_25995_length_249_cov_0.875000_g25677_i0 PRJNA1108009 25995 249 0.875 2.17875 Halicephalobus sp. NKZ332 2598192 Nematoda Nematoda 79.3 3.62e-15   NR KAE9548784.1 2598192 g25677 i0 74.5 0.614457831325301 51 13 61.4 0 38 190 214 264 KAE9548784.1 hypothetical protein FO519_008006 [Halicephalobus sp. NKZ332] diamond 153 79.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus sp. NKZ332
31227878 31227878 PRJNA1108009_P_NODE_11435_length_396_cov_1.185759_g11117_i0 PRJNA1108009 11435 396 1.185759 4.69560564 Opisthokonta 33154 Nematoda Nematoda 144 4.979999999999999e-37   NR NP_001379081.1 6239 g11117 i0 56.9 10.0681818181818 130 56 98.5 0 3 392 323 452 NP_001379081.1 Polyadenylate-binding protein [Caenorhabditis elegans] diamond 3987 144 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
31300014 31300014 PRJNA1108009_P_NODE_24995_length_251_cov_0.865169_g24677_i0 PRJNA1108009 24995 251 0.865169 2.17157419 Strongyloides ratti 34506 Nematoda Nematoda 129 1.4799999999999998e-32   NR XP_024501789.1 34506 g24677 i0 72.8 0.968127490039841 81 22 96.8 0 245 3 258 338 XP_024501789.1 Gamma-glutamyltranspeptidase family-containing protein [Strongyloides ratti] diamond 243 129 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
31797189 31797189 PRJNA1108009_P_NODE_26177_length_249_cov_0.875000_g25859_i0 PRJNA1108009 26177 249 0.875 2.17875 Rhabditida 6236 Nematoda Nematoda 92 1.65e-19   NR KAI1724054.1 166010 g25859 i0 63.2 3.02409638554217 87 24 98.8 4 248 3 409 492 KAI1724054.1 neural proliferation differentiation control-1 protein (NPDC1) domain-containing protein [Ditylenchus destructor] diamond 753 92 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anguinidae Ditylenchus Ditylenchus destructor
32745807 32745807 PRJNA1108009_P_NODE_18120_length_305_cov_1.327586_g17802_i0 PRJNA1108009 18120 305 1.327586 4.0491373 Metazoa 33208 Nematoda Nematoda 110 8.37e-29   NR CDW53287.1 36087 g17802 i0 59.6 60.0590163934426 89 36 87.5 0 39 305 16 104 CDW53287.1 Ribosomal L31e domain containing protein [Trichuris trichiura] diamond 18318 110 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris trichiura
32785751 32785751 PRJNA1108009_P_NODE_30100_length_243_cov_0.905882_g29782_i0 PRJNA1108009 30100 243 0.905882 2.20129326 Mesorhabditis belari 2138241 Nematoda Nematoda 154 5.079999999999999e-43   NR CAJ0933675.1 2138241 g29782 i0 88.8 0.987654320987654 80 9 98.8 0 241 2 318 397 CAJ0933675.1 unnamed protein product, partial [Mesorhabditis belari] diamond 240 154 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis belari

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;