RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1108009", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA1108009 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12967008 12967008 PRJNA1108009_P_NODE_29871_length_244_cov_0.900585_g29553_i0 PRJNA1108009 29871 244 0.900585 2.1974274 Roseisolibacter agri 2014610 Bacteria Bacteria 147 8.33e-39   NR WP_284350330.1 2014610 g29553 i0 87.7 0.995901639344262 81 10 99.6 0 1 243 449 529 WP_284350330.1 M14 family metallopeptidase [Roseisolibacter agri] diamond 243 147 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Roseisolibacter Roseisolibacter agri
32754391 32754391 PRJNA1108009_P_NODE_15260_length_337_cov_1.121212_g14942_i0 PRJNA1108009 15260 337 1.121212 3.77848444 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 43.9 0.0377   NR HEX5963486.1 2448054 g14942 i0 40.7 0.480712166172107 54 32 48.1 0 75 236 218 271 HEX5963486.1 type II CAAX endopeptidase family protein [Gemmatimonadales bacterium] diamond 162 43.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;