RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA1108009", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Desantisiibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Desantisiibacteriota · 1 ✖

tax_clade 1

  • Bacteria candidate phyla · 1 ✖

bioproject 1

  • PRJNA1108009 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32745811 32745811 PRJNA1108009_P_NODE_31380_length_241_cov_0.916667_g31062_i0 PRJNA1108009 31380 241 0.916667 2.20916747 Bacteria 2 Bacteria Bacteria 63.5 3.89e-11   NR PIX17685.1 1974545 g31062 i0 67.4 2.67634854771784 43 14 53.5 0 239 111 33 75 PIX17685.1 MAG: hypothetical protein COZ71_01995, partial [Candidatus Desantisbacteria bacterium CG_4_8_14_3_um_filter_40_12] diamond 645 63.5 1 Bacteria Bacteria candidate phyla   Candidatus Desantisiibacteriota         Candidatus Desantisbacteria bacterium CG_4_8_14_3_um_filter_40_12

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;