RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1105232" and tax_phylum = "Ignavibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1105232 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12966395 12966395 PRJNA1105232_S_NODE_10391_length_198_cov_9.167785_g10175_i0 PRJNA1105232 10391 198 9.167785 18.1522143 Ignavibacteria bacterium 2053306 Bacteria Bacteria 95.9 3.89e-21   NR HEY3250619.1 2053306 g10175 i0 67.7 6.93939393939394 65 21 98.5 0 197 3 663 727 HEY3250619.1 aconitate hydratase [Ignavibacteria bacterium] diamond 1374 95.9 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
30067628 30067628 PRJNA1105232_S_NODE_5752_length_251_cov_1.490099_g5536_i0 PRJNA1105232 5752 251 1.490099 3.74014849 Melioribacteraceae bacterium 2614255 Bacteria Bacteria 91.7 2.16e-19   NR MEJ5352200.1 2614255 g5536 i0 63.5 0.884462151394422 74 27 88.4 0 30 251 400 473 MEJ5352200.1 SLC13 family permease [Melioribacteraceae bacterium] diamond 222 91.7 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Melioribacteraceae   Melioribacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;