RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

26 rows where bioproject = "PRJNA1105232" and tax_clade = "core chlorophytes"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 26 ✖

bioproject 1

  • PRJNA1105232 · 26 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2763259 2763259 PRJNA1105232_S_NODE_11703_length_189_cov_1.114286_g11487_i0 PRJNA1105232 11703 189 1.114286 2.10600054 Chlamydomonas cribrum 69356 Plants Plants 93.5 9.56e-15   NTclustered gi|1483735093|dbj|LC380266.1| 69356 g11487 i0 87.5 38.7248677248677 80 10 42 0 1 80 372 293 Chlamydomonas cribrum SAG 13.72 chloroplast atpB gene for ATP synthase beta-subunit, partial cds blastn 7319 93.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas cribrum
2763314 2763314 PRJNA1105232_S_NODE_7943_length_221_cov_1.668605_g7727_i0 PRJNA1105232 7943 221 1.668605 3.68761705 Monoraphidium neglectum 145388 Plants Plants 104 5.33e-18   NTclustered gi|926774775|ref|XM_014040408.1| 145388 g7727 i0 79.73 12.7013574660633 148 26 66 4 1 146 394 539 Monoraphidium neglectum 60S ribosomal protein L10 mRNA blastn 2807 104 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
4039344 4039344 PRJNA1105232_S_NODE_16344_length_165_cov_1.344828_g16128_i0 PRJNA1105232 16344 165 1.344828 2.2189662 Chlorella variabilis 554065 Plants Plants 52.8 0.014   NTclustered gi|552824771|ref|XM_005846606.1| 554065 g16128 i0 100 0.16969696969697 28 0 17 0 122 149 2148 2175 Chlorella variabilis hypothetical protein (CHLNCDRAFT_53051) mRNA, complete cds blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
5315458 5315458 PRJNA1105232_S_NODE_15545_length_168_cov_0.873950_g15329_i0 PRJNA1105232 15545 168 0.87395 1.468236 Trebouxia sp. SL0000003 3350044 Plants Plants 163 6.25e-36   NTclustered gi|2917929626|emb|OZ234914.1| 3350044 g15329 i0 95.146 6.69642857142857 103 5 61 0 19 121 1365587 1365689 Trebouxia sp. SL0000003 genome assembly, chromosome: 9 blastn 1125 163 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
9140197 9140197 PRJNA1105232_S_NODE_3308_length_311_cov_4.118321_g3092_i0 PRJNA1105232 3308 311 4.118321 12.80797831 Trebouxia lynnae 1825957 Plants Plants 67.6 1.04e-6   NTclustered gi|1750939486|gb|MH917293.1| 1825957 g3092 i0 87.719 0.183279742765273 57 7 18 0 102 158 13045 13101 Trebouxia sp. TR9 mitochondrion, complete genome blastn 57 67.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia lynnae
9140223 9140223 PRJNA1105232_S_NODE_8688_length_213_cov_2.609756_g8472_i0 PRJNA1105232 8688 213 2.609756 5.55878028 Raphidocelis subcapitata 307507 Plants Plants 97.4 7.32e-24   NR GBG00329.1 307507 g8472 i0 60.3 1.02816901408451 73 27 100 1 1 213 53 125 GBG00329.1 60S ribosomal protein L27a [Raphidocelis subcapitata] diamond 219 97.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Raphidocelis Raphidocelis subcapitata
13773712 13773712 PRJNA1105232_S_NODE_6911_length_233_cov_2.097826_g6695_i0 PRJNA1105232 6911 233 2.097826 4.88793458 Chlorellaceae 35461 Plants Plants 139 4.39e-37   NR KAI3433788.1 3077 g6695 i0 77.6 2.96137339055794 76 17 97.9 0 230 3 162 237 KAI3433788.1 hypothetical protein D9Q98_003593 [Chlorella vulgaris] diamond 690 140 0.992857142857143 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella vulgaris
15048103 15048103 PRJNA1105232_S_NODE_1612_length_407_cov_7.924581_g1397_i0 PRJNA1105232 1612 407 7.924581 32.25304467 Trebouxiophyceae 75966 Plants Plants 63.9 1.8e-5   NTclustered gi|371782132|emb|HE610164.1| 33092 g1397 i0 95 16.0884520884521 40 2 10 0 91 130 76 37 Koliella longiseta plastid partial 23S rRNA gene, strain SAG 470-1 blastn 6548 63.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta
16789705 16789705 PRJNA1105232_S_NODE_1354_length_435_cov_3.976684_g1140_i0 PRJNA1105232 1354 435 3.976684 17.2985754 Chlorophyta 3041 Plants Plants 122 4.32e-29   NR KAL4856168.1 3077 g1140 i0 75.3 4.98620689655172 93 20 62.1 2 3 272 72 164 KAL4856168.1 V-type proton ATPase proteolipid subunit [Chlorella vulgaris] diamond 2169 122 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella vulgaris
19338399 19338399 PRJNA1105232_S_NODE_12636_length_183_cov_1.164179_g12420_i0 PRJNA1105232 12636 183 1.164179 2.13044757 Koliella longiseta 33092 Plants Plants 87.9 4.27e-13   NTclustered gi|371782132|emb|HE610164.1| 33092 g12420 i0 88.889 28.9398907103825 72 7 39 1 45 115 76 5 Koliella longiseta plastid partial 23S rRNA gene, strain SAG 470-1 blastn 5296 87.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta
20613705 20613705 PRJNA1105232_S_NODE_1137_length_464_cov_7.693976_g923_i0 PRJNA1105232 1137 464 7.693976 35.70004864 Chlorellales 35460 Plants Plants 170 3.81e-51   NR RMZ53584.1 3075 g923 i0 59.5 6.63362068965517 153 56 98.9 3 462 4 1 147 RMZ53584.1 hypothetical protein APUTEX25_003406 [Auxenochlorella protothecoides] diamond 3078 170 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
24438530 24438530 PRJNA1105232_S_NODE_7940_length_221_cov_1.813953_g7724_i0 PRJNA1105232 7940 221 1.813953 4.00883613 Chlamydomonas reinhardtii 3055 Plants Plants 56.5 0.002   NTclustered gi|2082235889|ref|XM_001700244.2| 3055 g7724 i0 100 0.135746606334842 30 0 14 0 76 105 2266 2295 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_01g009400v5), mRNA blastn 30 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
26783039 26783039 PRJNA1105232_S_NODE_14321_length_173_cov_1.677419_g14105_i0 PRJNA1105232 14321 173 1.677419 2.90193487 Raphidocelis subcapitata 307507 Plants Plants 73.2 2.67e-13   NR GBF97767.1 307507 g14105 i0 60 0.867052023121387 50 20 86.7 0 171 22 447 496 GBF97767.1 hypothetical protein Rsub_10192 [Raphidocelis subcapitata] diamond 150 73.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Raphidocelis Raphidocelis subcapitata
27257344 27257344 PRJNA1105232_S_NODE_16903_length_163_cov_2.026316_g16687_i0 PRJNA1105232 16903 163 2.026316 3.30289508 [Myrmecia] bisecta 41462 Plants Plants 48.1 1.6e-4   NR KAK9807024.1 41462 g16687 i0 44.2 3.88343558282209 52 29 95.7 0 8 163 1780 1831 KAK9807024.1 hypothetical protein WJX72_010915 [[Myrmecia] bisecta] diamond 633 48.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia [Myrmecia] bisecta
27415616 27415616 PRJNA1105232_S_NODE_14983_length_170_cov_1.289256_g14767_i0 PRJNA1105232 14983 170 1.289256 2.1917352 Pedinophyceae sp. YPF-7 765719 Plants Plants 53.1 2.1e-6   NR CAG9465252.1 765719 g14767 i0 54.7 0.935294117647059 53 22 90 1 17 169 134 186 CAG9465252.1 unnamed protein product [Pedinophyceae sp. YPF-701] diamond 159 53.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Pedinophyceae       Pedinophyceae sp. YPF-701
27478490 27478490 PRJNA1105232_S_NODE_9903_length_203_cov_1.012987_g9687_i0 PRJNA1105232 9903 203 1.012987 2.05636361 Trebouxia sp. C 2796353 Plants Plants 62.4 2.34e-9   NR KAL3144876.1 3373144 g9687 i0 47.4 1.69950738916256 57 30 84.2 0 3 173 288 344 KAL3144876.1 hypothetical protein ABBQ38_001976 [Trebouxia sp. C0009 RCD-2024] diamond 345 62.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. C0009 RCD-2024
28006799 28006799 PRJNA1105232_S_NODE_7585_length_225_cov_1.181818_g7369_i0 PRJNA1105232 7585 225 1.181818 2.6590905 Eukaryota 2759 Plants Plants 110 1.57e-26   NR KAG1679787.1 1653778 g7369 i0 63.9 2.93333333333333 72 26 96 0 218 3 304 375 KAG1679787.1 hypothetical protein FOA52_012698 [Chlamydomonas sp. UWO 241] diamond 660 110 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas sp. UWO 241
28827280 28827280 PRJNA1105232_S_NODE_15168_length_169_cov_1.300000_g14952_i0 PRJNA1105232 15168 169 1.3 2.197 Viridiplantae 33090 Plants Plants 95.1 4.670000000000001e-21   NR KAI8476721.1 39955 g14952 i0 73.2 4.89940828402367 56 15 99.4 0 168 1 495 550 KAI8476721.1 MAG: phosphoglycerate mutase [Monoraphidium minutum] diamond 828 95.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium minutum
29057314 29057314 PRJNA1105232_S_NODE_14568_length_172_cov_1.268293_g14352_i0 PRJNA1105232 14568 172 1.268293 2.18146396 Chlorella variabilis 554065 Plants Plants 76.6 1.55e-14   NR XP_005847056.1 554065 g14352 i0 69.2 1.81395348837209 52 15 90.7 1 9 164 860 910 XP_005847056.1 hypothetical protein CHLNCDRAFT_56190 [Chlorella variabilis] diamond 312 76.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
29278052 29278052 PRJNA1105232_S_NODE_8529_length_215_cov_0.933735_g8313_i0 PRJNA1105232 8529 215 0.933735 2.00753025 Chlorella variabilis 554065 Plants Plants 76.6 2.95e-14   NR XP_005847023.1 554065 g8313 i0 54.2 1.0046511627907 72 31 97.7 1 212 3 76 147 XP_005847023.1 hypothetical protein CHLNCDRAFT_134635 [Chlorella variabilis] diamond 216 76.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
29972907 29972907 PRJNA1105232_S_NODE_1491_length_419_cov_5.864865_g1276_i0 PRJNA1105232 1491 419 5.864865 24.57378435 Trebouxia sp. C 2796353 Plants Plants 120 1.5499999999999998e-31   NR KAL3163003.1 3373145 g1276 i0 63.8 1.33174224343675 94 34 67.3 0 412 131 41 134 KAL3163003.1 hypothetical protein ABBQ32_009435 [Trebouxia sp. C0010 RCD-2024] diamond 558 120 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. C0010 RCD-2024
31047447 31047447 PRJNA1105232_S_NODE_12575_length_183_cov_1.902985_g12359_i0 PRJNA1105232 12575 183 1.902985 3.48246255 Coccomyxa viridis 1274662 Plants Plants 70.5 2.18e-12   NR CAK0780974.1 1274662 g12359 i0 61.1 0.885245901639344 54 21 88.5 0 18 179 274 327 CAK0780974.1 hypothetical protein CVIRNUC_005241 [Coccomyxa viridis] diamond 162 70.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa viridis
31679439 31679439 PRJNA1105232_S_NODE_10357_length_199_cov_1.040000_g10141_i0 PRJNA1105232 10357 199 1.04 2.0696 Tetradesmus obliquus 3088 Plants Plants 59.3 2.53e-8   NR WIA18133.1 3088 g10141 i0 44.3 1.68844221105528 61 34 92 0 5 187 215 275 WIA18133.1 hypothetical protein OEZ85_009609 [Tetradesmus obliquus] diamond 336 59.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
32272142 32272142 PRJNA1105232_S_NODE_15818_length_167_cov_0.881356_g15602_i0 PRJNA1105232 15818 167 0.881356 1.47186452 Eukaryota 2759 Plants Plants 93.2 2.23e-20   NR GBF95481.1 307507 g15602 i0 75 21.4131736526946 48 12 86.2 0 166 23 641 688 GBF95481.1 hypothetical protein Rsub_07831 [Raphidocelis subcapitata] diamond 3576 93.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Raphidocelis Raphidocelis subcapitata
32312639 32312639 PRJNA1105232_S_NODE_3399_length_308_cov_4.571429_g3183_i0 PRJNA1105232 3399 308 4.571429 14.08000132 Monoraphidium minutum 39955 Plants Plants 66.2 3.39e-10   NR KAI8466552.1 39955 g3183 i0 46.6 2.70779220779221 73 32 64.3 2 305 108 236 308 KAI8466552.1 MAG: nucleosome assembly protein-domain-containing protein [Monoraphidium minutum] diamond 834 66.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium minutum
32619717 32619717 PRJNA1105232_S_NODE_9900_length_203_cov_1.240260_g9684_i0 PRJNA1105232 9900 203 1.24026 2.5177278 Eukaryota 2759 Plants Plants 116 3.39e-31   NR KXZ52017.1 33097 g9684 i0 86.6 1837.68472906404 67 9 99 0 201 1 75 141 KXZ52017.1 hypothetical protein GPECTOR_10g1040 [Gonium pectorale] diamond 373050 117 0.991452991452991 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Gonium Gonium pectorale

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;