RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA1105232", tax_clade = "Stenosarchaea group" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 1 ✖

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 1 ✖

bioproject 1

  • PRJNA1105232 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30636211 30636211 PRJNA1105232_S_NODE_8173_length_218_cov_2.378698_g7957_i0 PRJNA1105232 8173 218 2.378698 5.18556164 Natronolimnobius baerhuensis 253108 Archaea Archaea 51.2 2.72e-5   NR WP_087714810.1 253108 g7957 i0 46.2 2.29816513761468 52 28 71.6 0 217 62 476 527 WP_087714810.1 hydroxysqualene dehydroxylase [Natronolimnobius baerhuensis] diamond 501 51.2 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronolimnobius Natronolimnobius baerhuensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;