RNAquarium Metadata Server
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contig_metadata

13 rows where bioproject = "PRJNA1105232", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 13 ✖

tax_clade 1

  • Sar · 13 ✖

bioproject 1

  • PRJNA1105232 · 13 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10416014 10416014 PRJNA1105232_S_NODE_169_length_1376_cov_16.330821_g15_i0 PRJNA1105232 169 1376 16.330821 224.71209696 Loxophyllum shini 1346494 SAR_Eukaryotes SAR_Eukaryotes 289 9.87e-73   NTclustered gi|375305428|gb|JF975388.1| 1346494 g15 i0 79.952 22.984011627907 419 63 30 17 962 1376 1224 823 Loxophyllum shini isolate PHB2007053101 28S ribosomal RNA gene, partial sequence blastn 31626 289 1 Eukaryota Sar   Ciliophora Litostomatea Pleurostomatida Litonotidae Loxophyllum Loxophyllum shini
11691249 11691249 PRJNA1105232_S_NODE_1030_length_480_cov_12.380510_g818_i0 PRJNA1105232 1030 480 12.38051 59.426448 Blepharisma stoltei 1481888 SAR_Eukaryotes SAR_Eukaryotes 246 2.62e-80   NR CAG9329179.1 1481888 g818 i0 77.9 1.925 154 33 96.3 1 18 479 63 215 CAG9329179.1 unnamed protein product [Blepharisma stoltei] diamond 924 246 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Blepharismidae Blepharisma Blepharisma stoltei
23164892 23164892 PRJNA1105232_S_NODE_8459_length_215_cov_2.506024_g8243_i0 PRJNA1105232 8459 215 2.506024 5.3879516 Ciliophora 5878 SAR_Eukaryotes SAR_Eukaryotes 117 1.8499999999999999e-28   NR CAD8197427.1 43137 g8243 i0 69 17.8046511627907 71 22 99.1 0 1 213 582 652 CAD8197427.1 unnamed protein product [Paramecium octaurelia] diamond 3828 118 0.991525423728814 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium octaurelia
27130497 27130497 PRJNA1105232_S_NODE_6982_length_232_cov_2.989071_g6766_i0 PRJNA1105232 6982 232 2.989071 6.93464472 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 44.7 0.00694   NR XP_001024718.2 312017 g6766 i0 35.6 2.70258620689655 73 47 94.4 0 10 228 571 643 XP_001024718.2 hypothetical protein TTHERM_00616480 [Tetrahymena thermophila SB210] diamond 627 44.7 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
27153383 27153383 PRJNA1105232_S_NODE_12402_length_184_cov_1.925926_g12186_i0 PRJNA1105232 12402 184 1.925926 3.54370384 root 1 Root_unresolved Root_unresolved 68.2 1.82e-11   NR XP_004030934.1 5932 g12186 i0 54.5 18.0326086956522 55 25 89.7 0 11 175 57 111 XP_004030934.1 hypothetical protein IMG5_150410, partial [Ichthyophthirius multifiliis] diamond 3318 68.6 0.994169096209913 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
27415615 27415615 PRJNA1105232_S_NODE_14383_length_173_cov_1.258065_g14167_i0 PRJNA1105232 14383 173 1.258065 2.17645245 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 58.9 2.79e-8   NR CDW81728.1 5949 g14167 i0 55.3 2.21965317919075 47 21 81.5 0 146 6 427 473 CDW81728.1 UNKNOWN [Stylonychia lemnae] diamond 384 58.9 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
28488927 28488927 PRJNA1105232_S_NODE_6367_length_241_cov_1.447917_g6151_i0 PRJNA1105232 6367 241 1.447917 3.48947997 Paramecium tetraurelia 5888 SAR_Eukaryotes SAR_Eukaryotes 66.2 1.9e-10   NR XP_001454002.1 5888 g6151 i0 52.3 1.61825726141079 65 31 80.9 0 238 44 523 587 XP_001454002.1 uncharacterized protein GSPATT00020277001 [Paramecium tetraurelia] diamond 390 66.2 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
28954018 28954018 PRJNA1105232_S_NODE_3388_length_309_cov_1.400000_g3172_i0 PRJNA1105232 3388 309 1.4 4.326 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 49.7 2.84e-4   NR KAL4436299.1 5901 g3172 i0 30.3 1.9126213592233 99 65 94.2 3 291 1 276 372 KAL4436299.1 hypothetical protein ABPG74_015890 [Tetrahymena malaccensis] diamond 591 49.7 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena malaccensis
29120570 29120570 PRJNA1105232_S_NODE_14769_length_171_cov_1.278689_g14553_i0 PRJNA1105232 14769 171 1.278689 2.18655819 Stentor coeruleus 5963 SAR_Eukaryotes SAR_Eukaryotes 51.6 1.04e-5   NR OMJ78006.1 5963 g14553 i0 42.3 0.912280701754386 52 30 91.2 0 169 14 296 347 OMJ78006.1 hypothetical protein SteCoe_22289 [Stentor coeruleus] diamond 156 51.6 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Stentoridae Stentor Stentor coeruleus
29301160 29301160 PRJNA1105232_S_NODE_9749_length_204_cov_1.909677_g9533_i0 PRJNA1105232 9749 204 1.909677 3.89574108 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 85.5 1.88e-17   NR KRX01897.1 266149 g9533 i0 75.5 4.42647058823529 53 13 77.9 0 2 160 416 468 KRX01897.1 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain [Pseudocohnilembus persalinus] diamond 903 86.3 0.990730011587486 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus
29656707 29656707 PRJNA1105232_S_NODE_4210_length_283_cov_5.534188_g3994_i0 PRJNA1105232 4210 283 5.534188 15.66175204 Tetrahymena utriculariae 2486642 SAR_Eukaryotes SAR_Eukaryotes 78.6 1.13e-14   NR KAL4483616.1 2486642 g3994 i0 53.2 1.67491166077739 79 37 83.7 0 41 277 22 100 KAL4483616.1 hypothetical protein ABPG72_006682 [Tetrahymena utriculariae] diamond 474 78.6 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena utriculariae
31015552 31015552 PRJNA1105232_S_NODE_10995_length_194_cov_1.075862_g10779_i0 PRJNA1105232 10995 194 1.075862 2.08717228 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 74.3 1.26e-13   NR XP_001024102.2 312017 g10779 i0 49.2 1.91752577319588 65 32 99 1 3 194 335 399 XP_001024102.2 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain protein [Tetrahymena thermophila SB210] diamond 372 74.3 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
31987087 31987087 PRJNA1105232_S_NODE_8478_length_215_cov_1.879518_g8262_i0 PRJNA1105232 8478 215 1.879518 4.0409637 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 60.5 1.48e-8   NR XP_001461148.1 5888 g8262 i0 58 8.84651162790698 50 21 69.8 0 64 213 2963 3012 XP_001461148.1 uncharacterized protein GSPATT00026097001 [Paramecium tetraurelia] diamond 1902 60.8 0.995065789473684 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;