RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1105232", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA1105232 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6590639 6590639 PRJNA1105232_S_NODE_1046_length_478_cov_9.724942_g834_i0 PRJNA1105232 1046 478 9.724942 46.48522276 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 169 8.91e-46   NR RMH73596.1 2026742 g834 i0 58 1.65062761506276 131 54 82.2 1 35 427 313 442 RMH73596.1 MAG: hypothetical protein D6675_02145, partial [Gemmatimonadota bacterium] diamond 789 169 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27194015 27194015 PRJNA1105232_S_NODE_9182_length_209_cov_1.300000_g8966_i0 PRJNA1105232 9182 209 1.3 2.717 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 68.2 2.57e-11   NR MEX1998671.1 2448054 g8966 i0 43.5 2.64114832535885 62 35 89 0 1 186 552 613 MEX1998671.1 hypothetical protein [Gemmatimonadales bacterium] diamond 552 68.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31923858 31923858 PRJNA1105232_S_NODE_7857_length_222_cov_0.901734_g7641_i0 PRJNA1105232 7857 222 0.901734 2.00184948 Pseudomonadati 3379134 Bacteria Bacteria 50.1 7.33e-5   NR MCA9764377.1 2026742 g7641 i0 44 2.72972972972973 50 28 67.6 0 6 155 686 735 MCA9764377.1 hypothetical protein [Gemmatimonadota bacterium] diamond 606 50.4 0.994047619047619 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;