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contig_metadata

30 rows where bioproject = "PRJNA1105232", tax_clade = "FCB group" and tax_phylum = "Bacteroidota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 30 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 30 ✖

bioproject 1

  • PRJNA1105232 · 30 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1487255 1487255 PRJNA1105232_S_NODE_15722_length_167_cov_1.762712_g15506_i0 PRJNA1105232 15722 167 1.762712 2.94372904 Chryseobacterium scophthalmum 59733 Bacteria Bacteria 176 7.969999999999999e-40   NTclustered gi|2653363380|gb|CP142423.1| 59733 g15506 i0 85.629 1 167 24 100 0 1 167 4578219 4578053 Chryseobacterium scophthalmum strain JUb44 chromosome blastn 167 176 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium scophthalmum
9948582 9948582 PRJNA1105232_S_NODE_13108_length_180_cov_1.572519_g12892_i0 PRJNA1105232 13108 180 1.572519 2.8305341999999998 Bacteroides 816 Bacteria Bacteria 52.8 0.015   NTclustered gi|2202814649|gb|CP092641.1| 818 g12892 i0 96.875 6.04444444444444 32 0 18 1 106 137 3950871 3950901 Bacteroides thetaiotaomicron strain VPI 5482 chromosome, complete genome blastn 1088 52.8 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides thetaiotaomicron
10416024 10416024 PRJNA1105232_S_NODE_2109_length_368_cov_2.981191_g1893_i0 PRJNA1105232 2109 368 2.981191 10.97078288 Bacteroidota bacterium 1898104 Bacteria Bacteria 76.3 2.79e-13   NR MBS1736473.1 1898104 g1893 i0 72.7 0.358695652173913 44 12 35.9 0 206 75 504 547 MBS1736473.1 hypothetical protein [Bacteroidota bacterium] diamond 132 76.3 1 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
12499241 12499241 PRJNA1105232_S_NODE_13750_length_176_cov_2.047244_g13534_i0 PRJNA1105232 13750 176 2.047244 3.60314944 Fluviicola 332102 Bacteria Bacteria 243 8.21e-60   NTclustered gi|470488043|ref|NR_076848.1| 191579 g13534 i0 91.477 13.9375 176 15 100 0 1 176 378 203 Fluviicola taffensis strain RW262 23S ribosomal RNA gene, complete sequence blastn 2453 243 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Crocinitomicaceae Fluviicola Fluviicola taffensis
16322922 16322922 PRJNA1105232_S_NODE_13453_length_178_cov_1.503876_g13237_i0 PRJNA1105232 13453 178 1.503876 2.67689928 Chryseobacterium 59732 Bacteria Bacteria 324 2.89e-84   NTclustered gi|1494289966|gb|CP033070.1| 2478663 g13237 i0 99.438 455.808988764045 178 1 100 0 1 178 1907515 1907692 Chryseobacterium sp. 3008163 chromosome, complete genome blastn 81134 324 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. 3008163
16789704 16789704 PRJNA1105232_S_NODE_13414_length_178_cov_2.015504_g13198_i0 PRJNA1105232 13414 178 2.015504 3.58759712 Flavobacterium sangjuense 2518177 Bacteria Bacteria 113 6.81e-21   NTclustered gi|1616390602|gb|CP038810.1| 2518177 g13198 i0 78.09 12.8202247191011 178 39 100 0 1 178 3059877 3059700 Flavobacterium sangjuense strain GS03 chromosome, complete genome blastn 2282 113 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sangjuense
16789743 16789743 PRJNA1105232_S_NODE_494_length_645_cov_3.491611_g299_i0 PRJNA1105232 494 645 3.491611 22.52089095 Chryseobacterium sp. ZHDP1 2838877 Bacteria Bacteria 1120 0   NTclustered gi|2046786976|gb|CP075682.1| 2838877 g299 i0 97.984 537.556589147287 645 13 100 0 1 645 1906803 1906159 Chryseobacterium sp. ZHDP1 chromosome, complete genome blastn 346724 1120 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. ZHDP1
21422425 21422425 PRJNA1105232_S_NODE_10857_length_195_cov_1.424658_g10641_i0 PRJNA1105232 10857 195 1.424658 2.7780831 Fluviicola 332102 Bacteria Bacteria 350 5.34e-92   NTclustered gi|470488043|ref|NR_076848.1| 191579 g10641 i0 98.974 263.189743589744 195 2 100 0 1 195 1469 1275 Fluviicola taffensis strain RW262 23S ribosomal RNA gene, complete sequence blastn 51322 350 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Crocinitomicaceae Fluviicola Fluviicola taffensis
24438522 24438522 PRJNA1105232_S_NODE_620_length_583_cov_5.910112_g414_i0 PRJNA1105232 620 583 5.910112 34.45595296 Bacteria 2 Bacteria Bacteria 157 1.23e-42   NR HLS88345.1 2021370 g414 i0 44.3 14.3207547169811 185 70 95.2 1 580 26 242 393 HLS88345.1 elongation factor Tu [Sphingobacteriaceae bacterium] diamond 8349 157 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae   Sphingobacteriaceae bacterium
26687813 26687813 PRJNA1105232_S_NODE_3641_length_301_cov_1.444444_g3425_i0 PRJNA1105232 3641 301 1.444444 4.34777644 Candidatus Paraprevotella stercorigallinarum 2838726 Bacteria Bacteria 98.2 2.09e-21   NR HIY36586.1 2838726 g3425 i0 45.1 3.00996677740864 102 54 99.7 1 301 2 375 476 HIY36586.1 SLC13 family permease [Candidatus Paraprevotella stercorigallinarum] diamond 906 98.2 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Paraprevotella Candidatus Paraprevotella stercorigallinarum
27067599 27067599 PRJNA1105232_S_NODE_17382_length_162_cov_0.920354_g17166_i0 PRJNA1105232 17382 162 0.920354 1.49097348 Marivirga sp. 2018662 Bacteria Bacteria 67 9.49e-12   NR MFT4741525.1 2018662 g17166 i0 54.7 0.981481481481482 53 23 98.1 1 161 3 103 154 MFT4741525.1 hypothetical protein [Marivirga sp.] diamond 159 67 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Marivirgaceae Marivirga Marivirga sp.
27343733 27343733 PRJNA1105232_S_NODE_4963_length_266_cov_1.198157_g4747_i0 PRJNA1105232 4963 266 1.198157 3.18709762 Pseudomonadati 3379134 Bacteria Bacteria 117 3.77e-28   NR MDI9355645.1 1869212 g4747 i0 74.4 28.3308270676692 82 20 91.4 1 24 266 301 382 MDI9355645.1 methionine synthase [Chitinophagaceae bacterium] diamond 7536 118 0.991525423728814 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae   Chitinophagaceae bacterium
27383877 27383877 PRJNA1105232_S_NODE_9303_length_208_cov_0.974843_g9087_i0 PRJNA1105232 9303 208 0.974843 2.02767344 Olivibacter domesticus 407022 Bacteria Bacteria 44.7 0.00505   NR WP_093327418.1 407022 g9087 i0 45.1 0.735576923076923 51 21 72.1 2 11 160 628 672 WP_093327418.1 DUF1963 domain-containing protein [Olivibacter domesticus] diamond 153 44.7 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Olivibacter Olivibacter domesticus
27541713 27541713 PRJNA1105232_S_NODE_12624_length_183_cov_1.164179_g12408_i0 PRJNA1105232 12624 183 1.164179 2.13044757 Paludibacter sp. 221 2302939 Bacteria Bacteria 61.2 5.07e-9   NR WP_163629084.1 2302939 g12408 i0 50 1.01639344262295 62 27 95.1 1 174 1 10 71 WP_163629084.1 tetratricopeptide repeat protein [Paludibacter sp. 221] diamond 186 61.2 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Paludibacteraceae Paludibacter Paludibacter sp. 221
27731413 27731413 PRJNA1105232_S_NODE_1944_length_380_cov_4.522659_g1728_i0 PRJNA1105232 1944 380 4.522659 17.1861042 Bacteroidia bacterium 2044936 Bacteria Bacteria 130 7.48e-34   NR MFN7015329.1 2044936 g1728 i0 58.2 1.92631578947368 122 50 95.5 1 378 16 197 318 MFN7015329.1 arginase [Bacteroidia bacterium] diamond 732 130 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia       Bacteroidia bacterium
28267677 28267677 PRJNA1105232_S_NODE_4086_length_287_cov_2.411765_g3870_i0 PRJNA1105232 4086 287 2.411765 6.92176555 Bacteroidia bacterium 2044936 Bacteria Bacteria 70.5 2.1e-12   NR HET6991572.1 2044936 g3870 i0 48 1.56794425087108 75 38 78.4 1 2 226 133 206 HET6991572.1 MIP/aquaporin family protein [Bacteroidia bacterium] diamond 450 70.5 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia       Bacteroidia bacterium
28299362 28299362 PRJNA1105232_S_NODE_3106_length_319_cov_7.077778_g2890_i0 PRJNA1105232 3106 319 7.077778 22.57811182 Bacteroidota bacterium 1898104 Bacteria Bacteria 53.5 1.41e-5   NR MEL6626461.1 1898104 g2890 i0 49.1 0.517241379310345 55 20 44.2 1 161 301 226 280 MEL6626461.1 Kazal-type serine protease inhibitor [Bacteroidota bacterium] diamond 165 53.5 1 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
29057313 29057313 PRJNA1105232_S_NODE_13148_length_180_cov_1.190840_g12932_i0 PRJNA1105232 13148 180 1.19084 2.143512 Algoriphagus antarcticus 238540 Bacteria Bacteria 58.9 1.23e-9   NR WP_086540478.1 238540 g12932 i0 48.2 0.933333333333333 56 27 90 1 4 165 9 64 WP_086540478.1 DUF2892 domain-containing protein [Algoriphagus antarcticus] diamond 168 58.9 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Algoriphagus Algoriphagus antarcticus
29593566 29593566 PRJNA1105232_S_NODE_14330_length_173_cov_1.677419_g14114_i0 PRJNA1105232 14330 173 1.677419 2.90193487 Hymenobacter negativus 2795026 Bacteria Bacteria 90.5 2.07e-19   NR WP_198069449.1 2795026 g14114 i0 78.9 12.728323699422 57 12 98.8 0 2 172 464 520 WP_198069449.1 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [Hymenobacter negativus] diamond 2202 90.5 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter negativus
29719988 29719988 PRJNA1105232_S_NODE_11850_length_188_cov_1.122302_g11634_i0 PRJNA1105232 11850 188 1.122302 2.10992776 Polaribacter sp. BM1 1920175 Bacteria Bacteria 42.7 0.0079   NR AQS93141.1 1529069 g11634 i0 47.6 1.34042553191489 42 22 67 0 52 177 19 60 AQS93141.1 hypothetical protein BXQ17_03190 [Polaribacter sp. BM10] diamond 252 42.7 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter sp. BM10
30130542 30130542 PRJNA1105232_S_NODE_15192_length_169_cov_1.300000_g14976_i0 PRJNA1105232 15192 169 1.3 2.197 Mesonia sp. K7 2218606 Bacteria Bacteria 62.8 1.14e-9   NR WP_111125800.1 2218606 g14976 i0 60.4 3.0887573964497 48 19 85.2 0 14 157 35 82 WP_111125800.1 sigma-54-dependent transcriptional regulator [Mesonia sp. K7] diamond 522 62.8 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Mesonia Mesonia sp. K7
30541610 30541610 PRJNA1105232_S_NODE_9053_length_210_cov_1.490683_g8837_i0 PRJNA1105232 9053 210 1.490683 3.1304343 Chryseobacterium sp. Hurlbut 1871047 Bacteria Bacteria 139 3.55e-36   NR WP_050377182.1 1681828 g8837 i0 92.9 1 70 5 100 0 210 1 581 650 WP_050377182.1 4-alpha-glucanotransferase [Chryseobacterium sp. Hurlbut01] diamond 210 139 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. Hurlbut01
30564214 30564214 PRJNA1105232_S_NODE_10973_length_194_cov_1.434483_g10757_i0 PRJNA1105232 10973 194 1.434483 2.78289702 Bacteroidota 976 Bacteria Bacteria 110 3.72e-26   NR WP_091548728.1 1003 g10757 i0 79.7 5.93814432989691 64 13 99 0 3 194 863 926 WP_091548728.1 aminomethyl-transferring glycine dehydrogenase [Thermoflexibacter ruber] diamond 1152 111 0.990990990990991 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Thermoflexibacteraceae Thermoflexibacter Thermoflexibacter ruber
30636207 30636207 PRJNA1105232_S_NODE_1293_length_444_cov_5.106329_g1079_i0 PRJNA1105232 1293 444 5.106329 22.67210076 Flavobacteriaceae bacterium 1871037 Bacteria Bacteria 167 2.19e-49   NR MDP2061423.1 1871037 g1079 i0 68.2 1.74324324324324 129 38 85.1 1 443 66 91 219 MDP2061423.1 30S ribosomal protein S8e [Flavobacteriaceae bacterium] diamond 774 167 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae   Flavobacteriaceae bacterium
31006865 31006865 PRJNA1105232_S_NODE_1414_length_428_cov_2.873351_g1200_i0 PRJNA1105232 1414 428 2.873351 12.29794228 Hanamia 2930254 Bacteria Bacteria 158 1.04e-44   NR TAN15520.1 1869212 g1200 i0 57.1 16.7803738317757 126 54 88.3 0 380 3 3 128 TAN15520.1 MAG: arginase [Chitinophagaceae bacterium] diamond 7182 159 0.993710691823899 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae   Chitinophagaceae bacterium
31038756 31038756 PRJNA1105232_S_NODE_9035_length_210_cov_2.031056_g8819_i0 PRJNA1105232 9035 210 2.031056 4.2652176 Bacteria 2 Bacteria Bacteria 76.6 2.66e-14   NR MFT6209994.1 2044936 g8819 i0 53.1 2.77142857142857 64 30 91.4 0 201 10 369 432 MFT6209994.1 cytochrome P450 [Bacteroidia bacterium] diamond 582 76.6 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia       Bacteroidia bacterium
31521574 31521574 PRJNA1105232_S_NODE_9776_length_204_cov_1.341935_g9560_i0 PRJNA1105232 9776 204 1.341935 2.7375474 Cytophagia bacterium 2026730 Bacteria Bacteria 46.6 6.74e-4   NR MDA9693102.1 2026730 g9560 i0 40.3 0.911764705882353 62 32 86.8 2 178 2 48 107 MDA9693102.1 hypothetical protein [Cytophagia bacterium] diamond 186 46.6 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia       Cytophagia bacterium
31797187 31797187 PRJNA1105232_S_NODE_5097_length_263_cov_3.130841_g4881_i0 PRJNA1105232 5097 263 3.130841 8.23411183 Bacteria 2 Bacteria Bacteria 97.8 1.2799999999999999e-23   NR MEC9134785.1 1898104 g4881 i0 56.4 6.20532319391635 78 34 89 0 25 258 51 128 MEC9134785.1 FKBP-type peptidyl-prolyl cis-trans isomerase [Bacteroidota bacterium] diamond 1632 98.2 0.995926680244399 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
31932563 31932563 PRJNA1105232_S_NODE_3557_length_304_cov_1.882353_g3341_i0 PRJNA1105232 3557 304 1.882353 5.72235312 Flavobacteriia bacterium 2044941 Bacteria Bacteria 45.4 0.00885   NR MBN9295070.1 2044941 g3341 i0 29.5 0.868421052631579 88 55 79.9 2 267 25 294 381 MBN9295070.1 histidine kinase [Flavobacteriia bacterium] diamond 264 45.4 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia       Flavobacteriia bacterium
32050480 32050480 PRJNA1105232_S_NODE_13438_length_178_cov_1.612403_g13222_i0 PRJNA1105232 13438 178 1.612403 2.87007734 Reichenbachiellaceae 2762302 Bacteria Bacteria 68.9 6.95e-13   NR WP_258105725.1 2959627 g13222 i0 55.2 3.82584269662921 58 26 97.8 0 3 176 76 133 WP_258105725.1 globin family protein [Marinoscillum sp. MHG1-6] diamond 681 68.9 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Reichenbachiellaceae Marinoscillum Marinoscillum sp. MHG1-6

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;