RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1105232" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 4 ✖

bioproject 1

  • PRJNA1105232 · 4 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20613771 20613771 PRJNA1105232_S_NODE_9717_length_204_cov_2.767742_g9501_i0 PRJNA1105232 9717 204 2.767742 5.64619368 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 127 5.97e-36   NR XP_013753337.1 461836 g9501 i0 89.7 1 68 7 100 0 1 204 45 112 XP_013753337.1 ubiquitin-60S ribosomal protein L40 [Thecamonas trahens ATCC 50062] diamond 204 127 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
29278051 29278051 PRJNA1105232_S_NODE_4729_length_271_cov_1.761261_g4513_i0 PRJNA1105232 4729 271 1.761261 4.77301731 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 80.9 4.15e-16   NR XP_013761184.1 461836 g4513 i0 51.8 0.940959409594096 85 40 93 1 5 256 39 123 XP_013761184.1 sterol-binding domain-containing protein [Thecamonas trahens ATCC 50062] diamond 255 80.9 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
29562255 29562255 PRJNA1105232_S_NODE_12230_length_185_cov_2.676471_g12014_i0 PRJNA1105232 12230 185 2.676471 4.95147135 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 61.6 3.62e-9   NR XP_013762925.1 461836 g12014 i0 76.5 0.551351351351351 34 8 55.1 0 185 84 294 327 XP_013762925.1 cruzipain [Thecamonas trahens ATCC 50062] diamond 102 61.6 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
31964178 31964178 PRJNA1105232_S_NODE_6798_length_235_cov_1.188172_g6582_i0 PRJNA1105232 6798 235 1.188172 2.7922042 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 70.1 7.61e-12   NR XP_013755964.1 461836 g6582 i0 52.3 2.59148936170213 65 30 81.7 1 232 41 404 468 XP_013755964.1 uncharacterized protein AMSG_07462 [Thecamonas trahens ATCC 50062] diamond 609 70.1 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;