RNAquarium Metadata Server
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contig_metadata

16 rows where bioproject = "PRJNA1105232", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 16 ✖

tax_clade 1

  • Amoebozoa · 16 ✖

bioproject 1

  • PRJNA1105232 · 16 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
212592 212592 PRJNA1105232_S_NODE_6921_length_233_cov_1.695652_g6705_i0 PRJNA1105232 6921 233 1.695652 3.95086916 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 86.7 8.75e-18   NR XP_004339798.1 1257118 g6705 i0 60.5 0.978540772532189 76 26 97.9 1 232 5 150 221 XP_004339798.1 acetylCoA acyltransferase, putative [Acanthamoeba castellanii str. Neff] diamond 228 86.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
5315472 5315472 PRJNA1105232_S_NODE_325_length_826_cov_25.505792_g142_i0 PRJNA1105232 325 826 25.505792 210.67784192 Vannella ebro 207334 Discosea other_Eukaryota 675 0   NTclustered gi|33946344|gb|AY294151.1| 207334 g142 i0 82.17 96.0520581113801 802 127 96 14 33 826 1137 344 Vannella ebro actin mRNA, complete cds blastn 79339 675 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella ebro
6590707 6590707 PRJNA1105232_S_NODE_8506_length_215_cov_1.343373_g8290_i0 PRJNA1105232 8506 215 1.343373 2.88825195 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 80.1 1.41e-16   NR XP_004337121.1 1257118 g8290 i0 57.6 0.823255813953488 59 25 82.3 0 197 21 54 112 XP_004337121.1 RAP1A, member of RAS oncogene family [Acanthamoeba castellanii str. Neff] diamond 177 80.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
15515249 15515249 PRJNA1105232_S_NODE_9573_length_205_cov_7.544872_g9357_i0 PRJNA1105232 9573 205 7.544872 15.4669876 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 119 1.74e-22   NTclustered gi|470458047|ref|XM_004341152.1| 1257118 g9357 i0 90.11 12.3609756097561 91 9 44 0 1 91 141 231 Acanthamoeba castellanii str. Neff polyubiquitin, putative (ACA1_335920), partial mRNA blastn 2534 119 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19338455 19338455 PRJNA1105232_S_NODE_8856_length_212_cov_0.957055_g8640_i0 PRJNA1105232 8856 212 0.957055 2.0289566 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 111 3.03e-20   NTclustered gi|470526273|ref|XM_004356675.1| 1257118 g8640 i0 94.444 2.41981132075472 72 4 34 0 130 201 408 337 Acanthamoeba castellanii str. Neff ribosomal protein L19e, putative (ACA1_174910), partial mRNA blastn 513 111 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
21889418 21889418 PRJNA1105232_S_NODE_618_length_584_cov_13.712150_g412_i0 PRJNA1105232 618 584 13.71215 80.078956 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 291 2.87e-90   NR XP_004337289.1 1257118 g412 i0 74.6 0.991438356164384 193 49 99.1 0 1 579 109 301 XP_004337289.1 eukaryotic translation elongation factor 2, putative [Acanthamoeba castellanii str. Neff] diamond 579 291 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24438510 24438510 PRJNA1105232_S_NODE_3660_length_300_cov_5.183267_g3444_i0 PRJNA1105232 3660 300 5.183267 15.549801 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 169 2.7299999999999998e-46   NR XP_004337289.1 1257118 g3444 i0 84.2 1.92 95 15 95 0 300 16 496 590 XP_004337289.1 eukaryotic translation elongation factor 2, putative [Acanthamoeba castellanii str. Neff] diamond 576 169 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
26592648 26592648 PRJNA1105232_S_NODE_1721_length_396_cov_9.731988_g1505_i0 PRJNA1105232 1721 396 9.731988 38.53867248 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 145 5.44e-41   NR XP_004337603.1 1257118 g1505 i0 53.1 4.97727272727273 130 61 98.5 0 392 3 78 207 XP_004337603.1 ribosomal protein L23, putative [Acanthamoeba castellanii str. Neff] diamond 1971 145 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27216785 27216785 PRJNA1105232_S_NODE_4582_length_274_cov_2.760000_g4366_i0 PRJNA1105232 4582 274 2.76 7.5624 root 1 Root_unresolved Root_unresolved 106 1.07e-26   NR XP_004334366.1 1257118 g4366 i0 51.6 5.97810218978102 91 44 99.6 0 2 274 95 185 XP_004334366.1 C8 sterol isomerase [Acanthamoeba castellanii str. Neff] diamond 1638 106 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27888860 27888860 PRJNA1105232_S_NODE_14285_length_173_cov_2.516129_g14069_i0 PRJNA1105232 14285 173 2.516129 4.35290317 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 51.2 1.45e-5   NR XP_004343948.1 1257118 g14069 i0 48.7 1.97687861271676 39 20 67.6 0 171 55 346 384 XP_004343948.1 zinc finger, C3HC4 type (RING finger) domain containing protein [Acanthamoeba castellanii str. Neff] diamond 342 51.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28511710 28511710 PRJNA1105232_S_NODE_5347_length_258_cov_1.492823_g5131_i0 PRJNA1105232 5347 258 1.492823 3.85148334 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 50.1 4.74e-5   NR XP_004344618.1 1257118 g5131 i0 45.2 1.43023255813953 62 34 72.1 0 256 71 41 102 XP_004344618.1 uncharacterized protein ACA1_278060 [Acanthamoeba castellanii str. Neff] diamond 369 50.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28804373 28804373 PRJNA1105232_S_NODE_16268_length_165_cov_2.241379_g16052_i0 PRJNA1105232 16268 165 2.241379 3.69827535 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 41.6 0.0339   NR XP_004334118.1 1257118 g16052 i0 41.5 0.963636363636364 53 31 96.4 0 165 7 220 272 XP_004334118.1 CBS domain containing protein [Acanthamoeba castellanii str. Neff] diamond 159 41.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30027537 30027537 PRJNA1105232_S_NODE_3551_length_304_cov_2.803922_g3335_i0 PRJNA1105232 3551 304 2.803922 8.52392288 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 95.5 9.93e-23   NR 7SOG_A 5755 g3335 i0 43.3 5.31907894736842 90 50 88.8 1 271 2 24 112 7SOG_A Chain A, Actophorin [Acanthamoeba castellanii] diamond 1617 96.3 0.991692627206646 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30099140 30099140 PRJNA1105232_S_NODE_5332_length_258_cov_2.507177_g5116_i0 PRJNA1105232 5332 258 2.507177 6.46851666 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 109 1.17e-27   NR XP_004349662.1 1257118 g5116 i0 64.2 0.941860465116279 81 29 94.2 0 257 15 107 187 XP_004349662.1 ribosomal protein L13, putative [Acanthamoeba castellanii str. Neff] diamond 243 109 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30289247 30289247 PRJNA1105232_S_NODE_4432_length_278_cov_1.436681_g4216_i0 PRJNA1105232 4432 278 1.436681 3.99397318 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 100 1.97e-24   NR XP_004342570.1 1257118 g4216 i0 56.4 1.68345323741007 78 33 84.2 1 27 260 72 148 XP_004342570.1 delta5 fatty acid desaturase [Acanthamoeba castellanii str. Neff] diamond 468 100 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31647753 31647753 PRJNA1105232_S_NODE_5297_length_259_cov_1.238095_g5081_i0 PRJNA1105232 5297 259 1.238095 3.20666605 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 147 6.07e-43   NR XP_004340819.1 1257118 g5081 i0 78.8 0.984555984555985 85 18 98.5 0 257 3 61 145 XP_004340819.1 ubiquitinconjugating enzyme protein E2, putative [Acanthamoeba castellanii str. Neff] diamond 255 147 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;