RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1104180" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1104180 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4039132 4039132 PRJNA1104180_P_NODE_22064_length_248_cov_0.880000_g21921_i0 PRJNA1104180 22064 248 0.88 2.1824 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 137 2.54e-37   NR MEA2552711.1 2682144 g21921 i0 82.9 4.93548387096774 82 14 99.2 0 246 1 246 327 MEA2552711.1 holliday junction helicase RuvB [Fimbriimonadaceae bacterium] diamond 1224 137 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
30099136 30099136 PRJNA1104180_P_NODE_16132_length_271_cov_1.555556_g15990_i0 PRJNA1104180 16132 271 1.555556 4.21555676 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 125 2.01e-32   NR MEA2552780.1 2682144 g15990 i0 70.2 3.59778597785978 84 25 93 0 254 3 4 87 MEA2552780.1 topoisomerase [Fimbriimonadaceae bacterium] diamond 975 125 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;