RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1104180", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 6 ✖

tax_kingdom 1

  • Pseudomonadati · 6 ✖

bioproject 1

  • PRJNA1104180 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1020219 1020219 PRJNA1104180_P_NODE_22641_length_247_cov_0.885057_g22498_i0 PRJNA1104180 22641 247 0.885057 2.18609079 Treponema 157 Bacteria Bacteria 457 4.05e-124   NTclustered gi|1807378492|gb|CP048020.1| 69710 g22498 i0 100 9.88663967611336 247 0 100 0 1 247 153291 153537 Treponema vincentii strain OMZ 804 chromosome, complete genome blastn 2442 457 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema vincentii
21889080 21889080 PRJNA1104180_P_NODE_16458_length_269_cov_1.923469_g16316_i0 PRJNA1104180 16458 269 1.923469 5.17413161 Treponema rectale 744512 Bacteria Bacteria 104 6.71e-18   NTclustered gi|1919550644|gb|CP031517.1| 744512 g16316 i0 82.258 4.86245353159851 124 19 46 3 109 231 1303887 1303766 Treponema rectale strain CHPA chromosome, complete genome blastn 1308 104 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema rectale
23164598 23164598 PRJNA1104180_P_NODE_17619_length_263_cov_1.621053_g17477_i0 PRJNA1104180 17619 263 1.621053 4.26336939 Treponema denticola 158 Bacteria Bacteria 486 5.5499999999999986e-133   NTclustered gi|2323013626|gb|CP109619.1| 158 g17477 i0 100 22.7946768060837 263 0 100 0 1 263 1416369 1416107 Treponema denticola strain KCOM 3500 chromosome, complete genome blastn 5995 486 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema denticola
26655948 26655948 PRJNA1104180_P_NODE_14301_length_281_cov_2.466346_g14159_i0 PRJNA1104180 14301 281 2.466346 6.93043226 Sphaerochaetaceae bacterium 2791017 Bacteria Bacteria 160 6.64e-46   NR MFA6775570.1 2791017 g14159 i0 93.7 0.843416370106762 79 5 84.3 0 279 43 146 224 MFA6775570.1 DUF362 domain-containing protein [Sphaerochaetaceae bacterium] diamond 237 160 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Sphaerochaetaceae   Sphaerochaetaceae bacterium
26846445 26846445 PRJNA1104180_P_NODE_14201_length_282_cov_1.325359_g14059_i0 PRJNA1104180 14201 282 1.325359 3.73751238 Spirochaetota bacterium 2202144 Bacteria Bacteria 130 2.84e-34   NR MDH4128789.1 2202144 g14059 i0 67 1.91489361702128 94 31 100 0 1 282 209 302 MDH4128789.1 flagellin [Spirochaetota bacterium] diamond 540 130 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
28330913 28330913 PRJNA1104180_P_NODE_25706_length_242_cov_0.911243_g25563_i0 PRJNA1104180 25706 242 0.911243 2.20520806 Treponema sp. 166 Bacteria Bacteria 74.3 3.16e-15   NR MCR5188557.1 166 g25563 i0 85.4 2.03305785123967 41 6 50.8 0 118 240 1 41 MCR5188557.1 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit alpha [Treponema sp.] diamond 492 74.3 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;