RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1104180", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

  • Bacillati · 2 ✖

bioproject 1

  • PRJNA1104180 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19338172 19338172 PRJNA1104180_P_NODE_20596_length_250_cov_1.740113_g20453_i0 PRJNA1104180 20596 250 1.740113 4.3502825 Mycoplasmopsis arginini 2094 Bacteria Bacteria 300 7.32e-77   NTclustered gi|2668342370|gb|CP143577.1| 2094 g20453 i0 89.451 3.792 237 25 95 0 1 237 251957 251721 Mycoplasmopsis arginini strain NCTC 10129 chromosome, complete genome blastn 948 300 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini
21889048 21889048 PRJNA1104180_P_NODE_14378_length_281_cov_1.399038_g14236_i0 PRJNA1104180 14378 281 1.399038 3.93129678 Metamycoplasma orale 2121 Bacteria Bacteria 520 5.909999999999999e-143   NTclustered gi|1563679895|emb|LR214940.1| 2121 g14236 i0 100 151.893238434164 281 0 100 0 1 281 696995 697275 Mycoplasma orale strain NCTC10112 genome assembly, chromosome: 1 blastn 42682 520 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma orale

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;