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contig_metadata

26 rows where bioproject = "PRJNA1104180", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 26 ✖

tax_clade 1

  • Sar · 26 ✖

bioproject 1

  • PRJNA1104180 · 26 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
212482 212482 PRJNA1104180_P_NODE_5381_length_402_cov_1.753799_g5239_i0 PRJNA1104180 5381 402 1.753799 7.05027198 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 617 3.0299999999999996e-172   NTclustered gi|556609|gb|U14734.1|PFU14734 5833 g5239 i0 99.703 12.8855721393035 337 1 84 0 66 402 416 80 Plasmodium falciparum histone H2B mRNA, complete cds blastn 5180 617 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
2763206 2763206 PRJNA1104180_P_NODE_6483_length_373_cov_19.170000_g6341_i0 PRJNA1104180 6483 373 19.17 71.5041 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 667 0   NTclustered gi|399931852|gb|JQ627150.1| 5833 g6341 i0 99.189 100.525469168901 370 3 99 0 1 370 589 958 Plasmodium falciparum isolate SF2 18S ribosomal RNA gene, partial sequence blastn 37496 667 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
3570849 3570849 PRJNA1104180_P_NODE_26503_length_241_cov_0.916667_g26360_i0 PRJNA1104180 26503 241 0.916667 2.20916747 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 446 8.519999999999999e-121   NTclustered gi|9927541|gb|AF180426.1|AF180426 5833 g26360 i0 100 34.0124481327801 241 0 100 0 1 241 313 553 Plasmodium falciparum methionine adenosyltransferase (MAT) mRNA, complete cds blastn 8197 446 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
4848270 4848270 PRJNA1104180_P_NODE_16164_length_271_cov_1.333333_g16022_i0 PRJNA1104180 16164 271 1.333333 3.61333243 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 496 9.55e-136   NTclustered gi|225542879|emb|FM207475.1| 5833 g16022 i0 99.631 4 271 1 100 0 1 271 750 1020 Plasmodium falciparum mRNA for acid phosphatase (sap gene) blastn 1084 496 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
5315378 5315378 PRJNA1104180_P_NODE_5665_length_394_cov_38.766355_g5523_i0 PRJNA1104180 5665 394 38.766355 152.7394387 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 725 0   NTclustered gi|1162436941|ref|XR_002273105.1| 36329 g5523 i0 100 52.9416243654822 392 0 99 0 3 394 3348 3739 Plasmodium falciparum 3D7 28S ribosomal RNA (PF3D7_0532000), rRNA blastn 20859 725 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
6123386 6123386 PRJNA1104180_P_NODE_2965_length_514_cov_42.385488_g2824_i0 PRJNA1104180 2965 514 42.385488 217.86140832 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 942 0   NTclustered gi|399931854|gb|JQ627152.1| 5833 g2824 i0 99.805 100.056420233463 513 1 99 0 1 513 1387 1899 Plasmodium falciparum isolate SF4 18S ribosomal RNA gene, partial sequence blastn 51429 948 0.993670886075949 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
7398129 7398129 PRJNA1104180_P_NODE_28806_length_197_cov_10.451613_g28663_i0 PRJNA1104180 28806 197 10.451613 20.58967761 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 359 8.98e-95   NTclustered gi|2088098231|gb|MT942979.1| 5833 g28663 i0 99.492 101.649746192893 197 1 100 0 1 197 72 268 Plasmodium falciparum isolate pf05h 18S small subunit ribosomal RNA gene, partial sequence blastn 20025 359 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
9139890 9139890 PRJNA1104180_P_NODE_16968_length_266_cov_19.305699_g16826_i0 PRJNA1104180 16968 266 19.305699 51.35315934 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 492 1.2099999999999999e-134   NTclustered gi|665764067|pdb|1VX6|A 36329 g16826 i0 100 36.593984962406 266 0 100 0 1 266 93 358 Chain A, 28S ribosomal RNA blastn 9734 492 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
9948515 9948515 PRJNA1104180_P_NODE_28408_length_208_cov_6.459259_g28265_i0 PRJNA1104180 28408 208 6.459259 13.43525872 Sarcocystidae 5809 SAR_Eukaryotes SAR_Eukaryotes 268 1.6599999999999994e-67   NTclustered gi|820699808|tpe|LN714499.1| 432359 g28265 i0 98.077 107.581730769231 156 0 75 3 41 195 5114387 5114234 TPA_asm: Toxoplasma gondii VEG, chromosome chrIX, complete genome blastn 22377 268 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii
12499130 12499130 PRJNA1104180_P_NODE_23270_length_246_cov_0.890173_g23127_i0 PRJNA1104180 23270 246 0.890173 2.18982558 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 444 3.14e-120   NTclustered gi|1533642471|emb|LR131480.1| 5833 g23127 i0 99.19 126.99593495935 247 0 100 2 1 246 4709 4464 Plasmodium falciparum genome assembly, organelle: plastid:apicoplast blastn 31241 444 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
13773544 13773544 PRJNA1104180_P_NODE_12251_length_294_cov_38.343891_g12109_i0 PRJNA1104180 12251 294 38.343891 112.73103954 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 536 6.1799999999999985e-148   NTclustered gi|399931853|gb|JQ627151.1| 5833 g12109 i0 100 96.0578231292517 290 0 99 0 5 294 349 60 Plasmodium falciparum isolate SF3 18S ribosomal RNA gene, partial sequence blastn 28241 536 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
15514887 15514887 PRJNA1104180_P_NODE_14573_length_280_cov_1.169082_g14431_i0 PRJNA1104180 14573 280 1.169082 3.2734296 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 507 4.58e-139   NTclustered gi|296004423|ref|XM_002808608.1| 36329 g14431 i0 99.286 9.01428571428571 280 2 100 0 1 280 589 310 Plasmodium falciparum 3D7 60S ribosomal protein L15, putative (PF3D7_0415900), partial mRNA blastn 2524 507 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
15515021 15515021 PRJNA1104180_P_NODE_23373_length_246_cov_0.890173_g23230_i0 PRJNA1104180 23373 246 0.890173 2.18982558 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 455 1.4500000000000002e-123   NTclustered gi|1371547065|ref|XM_001350596.3| 36329 g23230 i0 100 4.96747967479675 246 0 100 0 1 246 416 171 Plasmodium falciparum 3D7 conserved Plasmodium protein, unknown function (PF3D7_1223500), partial mRNA blastn 1222 455 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
16789525 16789525 PRJNA1104180_P_NODE_23234_length_246_cov_0.890173_g23091_i0 PRJNA1104180 23234 246 0.890173 2.18982558 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 453 5.2100000000000006e-123   NTclustered gi|124506420|ref|XM_001351772.1| 36329 g23091 i0 100 2.97967479674797 245 0 99 0 2 246 5548 5304 Plasmodium falciparum 3D7 structural maintenance of chromosomes protein 6, putative (PF3D7_0525200), partial mRNA blastn 733 453 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
16789663 16789663 PRJNA1104180_P_NODE_8274_length_340_cov_58.771536_g8132_i0 PRJNA1104180 8274 340 58.771536 199.8232224 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 628 1.1699999999999999e-175   NTclustered gi|665764067|pdb|1VX6|A 36329 g8132 i0 100 27.0058823529412 340 0 100 0 1 340 716 377 Chain A, 28S ribosomal RNA blastn 9182 628 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
17597925 17597925 PRJNA1104180_P_NODE_15234_length_276_cov_1.497537_g15092_i0 PRJNA1104180 15234 276 1.497537 4.13320212 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 505 1.62e-138   NTclustered gi|1145260895|ref|XM_020115023.1| 5854 g15092 i0 99.638 9.96376811594203 276 1 100 0 1 276 317 592 Plasmodium reichenowi nucleosome assembly protein, putative partial mRNA blastn 2750 510 0.990196078431373 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium reichenowi
17597984 17597984 PRJNA1104180_P_NODE_22054_length_248_cov_0.880000_g21911_i0 PRJNA1104180 22054 248 0.88 2.1824 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 448 2.4499999999999996e-121   NTclustered gi|186694386|gb|EU647462.1| 5833 g21911 i0 100 97.5725806451613 242 0 98 0 2 243 693 452 Plasmodium falciparum isolate 13 merozoite surface protein 2 (MSP-2) gene, partial cds blastn 24198 448 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
18064049 18064049 PRJNA1104180_P_NODE_20915_length_250_cov_0.870056_g20772_i0 PRJNA1104180 20915 250 0.870056 2.17514 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 429 8.949999999999998e-116   NTclustered gi|820695469|tpe|LN714488.1| 572307 g20772 i0 97.6 3.004 250 6 100 0 1 250 117683 117434 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 751 429 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
18064056 18064056 PRJNA1104180_P_NODE_21555_length_249_cov_0.875000_g21412_i0 PRJNA1104180 21555 249 0.875 2.17875 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 460 3.16e-125   NTclustered gi|9901|emb|Y00519.1| 5833 g21412 i0 100 5.52610441767068 249 0 100 0 1 249 317 69 Plasmodium mRNA for hypoxanthine-guanine phosphoribosyltransferase (HPRT) blastn 1376 460 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
20146680 20146680 PRJNA1104180_P_NODE_23236_length_246_cov_0.890173_g23093_i0 PRJNA1104180 23236 246 0.890173 2.18982558 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 86.1 2.19e-12   NTclustered gi|1145257362|ref|XM_012906357.2| 5854 g23093 i0 100 0.934959349593496 46 0 19 0 1 46 46 1 Plasmodium reichenowi SNARE protein, putative partial mRNA blastn 230 86.1 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium reichenowi
20613666 20613666 PRJNA1104180_P_NODE_7277_length_356_cov_90.579505_g7135_i0 PRJNA1104180 7277 356 90.579505 322.4630378 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 634 2.6299999999999992e-177   NTclustered gi|924644|gb|U21939.1|PFU21939 5833 g7135 i0 100 69.8370786516854 343 0 96 0 14 356 3457 3115 Plasmodium falciparum 5.8S rRNA and LSU rRNA genes, complete sequence, and ITS1, partial sequence and ITS2, complete sequence blastn 24862 634 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
21422311 21422311 PRJNA1104180_P_NODE_2417_length_564_cov_20.720978_g2276_i0 PRJNA1104180 2417 564 20.720978 116.86631592 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 1037 0   NTclustered gi|400365274|gb|JQ684659.1| 5833 g2276 i0 99.823 80.281914893617 564 1 100 0 1 564 1290 727 Plasmodium falciparum isolate LF3 28S ribosomal RNA gene, partial sequence blastn 45279 1037 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
21889259 21889259 PRJNA1104180_P_NODE_3118_length_503_cov_55.118605_g2977_i0 PRJNA1104180 3118 503 55.118605 277.24658315 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 922 0   NTclustered gi|665764067|pdb|1VX6|A 36329 g2977 i0 100 53.9423459244533 499 0 99 0 1 499 2133 1635 Chain A, 28S ribosomal RNA blastn 27133 922 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
22697283 22697283 PRJNA1104180_P_NODE_26978_length_236_cov_2.883436_g26835_i0 PRJNA1104180 26978 236 2.883436 6.80490896 Eucoccidiorida 75739 SAR_Eukaryotes SAR_Eukaryotes 122 1.5899999999999995e-23   NTclustered gi|1174531203|gb|KX008013.1| 5811 g26835 i0 100 27.9661016949153 66 0 28 0 87 152 300 365 Toxoplasma gondii isolate Tgn15 18S ribosomal RNA gene, partial sequence blastn 6600 122 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii
23164768 23164768 PRJNA1104180_P_NODE_5959_length_387_cov_1.203822_g5817_i0 PRJNA1104180 5959 387 1.203822 4.65879114 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 579 1.3699999999999996e-160   NTclustered gi|124801983|ref|XM_001347288.1| 36329 g5817 i0 100 3.23514211886305 313 0 81 0 1 313 313 1 Plasmodium falciparum 3D7 inner membrane complex protein 1c, putative (PF3D7_1003600), partial mRNA blastn 1252 579 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
25246654 25246654 PRJNA1104180_P_NODE_21720_length_248_cov_26.205714_g21577_i0 PRJNA1104180 21720 248 26.205714 64.99017072 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 385 1.95e-102   NTclustered gi|400365273|gb|JQ684658.1| 5833 g21577 i0 100 39.7822580645161 208 0 95 0 41 248 2182 2389 Plasmodium falciparum isolate LF2 28S ribosomal RNA gene, partial sequence blastn 9866 385 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;