RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1104180", tax_clade = "Opisthokonta" and tax_phylum = "Mollusca"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA1104180 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13773648 13773648 PRJNA1104180_P_NODE_28831_length_196_cov_21.821138_g28688_i0 PRJNA1104180 28831 196 21.821138 42.76943048 root 1 Root_unresolved Root_unresolved 278 2.57e-70   NTclustered gi|1577001649|gb|MK543285.1| 37541 g28688 i0 92.746 71.1989795918367 193 13 98 1 2 193 3684 3492 Buccinum undatum voucher 20140783 internal transcribed spacer 2 and large subunit ribosomal RNA gene, partial sequence blastn 13955 278 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Neogastropoda Buccinidae Buccinum Buccinum undatum
22697333 22697333 PRJNA1104180_P_NODE_7398_length_354_cov_5.306050_g7256_i0 PRJNA1104180 7398 354 5.30605 18.783417 Iravadia 1260482 Mollusca Mollusca 616 9.469999999999999e-172   NTclustered gi|515425626|gb|KC439932.1| 1346504 g7256 i0 98.023 100.522598870056 354 7 100 0 1 354 376 729 Iravadia sp. 1 REG-2013 isolate IQ-DIN-A 28S ribosomal RNA gene, partial sequence blastn 35585 621 0.99194847020934 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Littorinimorpha Iravadiidae Iravadia Iravadia goliath
27415613 27415613 PRJNA1104180_P_NODE_22543_length_247_cov_0.885057_g22400_i0 PRJNA1104180 22543 247 0.885057 2.18609079 Haliotis rubra 36100 Mollusca Mollusca 43.9 0.015   NR XP_046564131.1 36100 g22400 i0 34.7 0.910931174089069 75 44 87.4 3 239 24 8 80 XP_046564131.1 extensin-like [Haliotis rubra] diamond 225 43.9 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Lepetellida Haliotidae Haliotis Haliotis rubra

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;