RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1104180" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA1104180 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18063946 18063946 PRJNA1104180_P_NODE_14315_length_281_cov_1.927885_g14173_i0 PRJNA1104180 14315 281 1.927885 5.41735685 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 486 5.989999999999999e-133   NTclustered gi|560190589|gb|KF633467.1| 91374 g14173 i0 97.865 35.1743772241993 281 6 100 0 1 281 3114 3394 Diplonema papillatum strain ATCC 50162 28S ribosomal RNA gene, complete sequence blastn 9884 486 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
21422242 21422242 PRJNA1104180_P_NODE_14637_length_279_cov_2.116505_g14495_i0 PRJNA1104180 14637 279 2.116505 5.90504895 Bodo 5712 Euglenozoa other_Eukaryota 510 3.5299999999999996e-140   NTclustered gi|45739076|gb|AY490234.1| 75058 g14495 i0 99.643 99.6774193548387 280 0 100 1 1 279 1823 2102 Bodo saltans 18S ribosomal RNA gene, partial sequence blastn 27810 510 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;