RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1103784", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1103784 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12965978 12965978 PRJNA1103784_P_NODE_3471_length_297_cov_1.241071_g3416_i0 PRJNA1103784 3471 297 1.241071 3.68598087 Fragilaria crotonensis 210448 SAR_Eukaryotes SAR_Eukaryotes 122 6.32e-33   NR KAI2504009.1 210448 g3416 i0 62.8 3.29292929292929 113 28 100 1 1 297 46 158 KAI2504009.1 ribosomal eL6-like protein [Fragilaria crotonensis] diamond 978 122 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria crotonensis
27659432 27659432 PRJNA1103784_P_NODE_6504_length_247_cov_0.885057_g6449_i0 PRJNA1103784 6504 247 0.885057 2.18609079 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 109 9.75e-28   NR KAL3788067.1 382360 g6449 i0 63.2 7.46963562753036 76 28 92.3 0 3 230 2 77 KAL3788067.1 hypothetical protein ACHAWO_005912 [Cyclotella atomus] diamond 1845 109 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella atomus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;