RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA1103784", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1103784 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12499001 12499001 PRJNA1103784_P_NODE_1330_length_441_cov_1.255435_g1275_i0 PRJNA1103784 1330 441 1.255435 5.53646835 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 815 0   NTclustered gi|14495562|gb|L21708.2|PFA34K 5821 g1275 i0 100 99.9637188208617 441 0 100 0 1 441 1265 825 Plasmodium berghei p23-like protein mRNA, partial cds blastn 44084 815 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium berghei
23164433 23164433 PRJNA1103784_P_NODE_2439_length_343_cov_2.396296_g2384_i0 PRJNA1103784 2439 343 2.396296 8.21929528 Babesia caballi 5871 SAR_Eukaryotes SAR_Eukaryotes 206 2.35e-48   NTclustered gi|2794952797|ref|XM_067862068.1| 5871 g2384 i0 80.292 46.1778425655977 274 52 80 2 37 309 450 178 Babesia caballi 60S ribosomal protein L11a, putative (BcabD6B2_55360), partial mRNA blastn 15839 206 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia caballi
28385409 28385409 PRJNA1103784_P_NODE_2786_length_324_cov_3.199203_g2731_i0 PRJNA1103784 2786 324 3.199203 10.36541772 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 99.8 9.75e-24   NR CAD2102082.1 119398 g2731 i0 46.1 4.69444444444444 102 55 94.4 0 322 17 21 122 CAD2102082.1 60S ribosomal protein L18, putative [Plasmodium vinckei brucechwatti] diamond 1521 99.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vinckei
31490031 31490031 PRJNA1103784_P_NODE_3916_length_284_cov_1.985782_g3861_i0 PRJNA1103784 3916 284 1.985782 5.63962088 Sarcocystis calchasi 1344799 SAR_Eukaryotes SAR_Eukaryotes 80.5 3.1e-15   NR CAL7864463.1 1344799 g3861 i0 43 2.94718309859155 93 52 97.2 1 283 8 314 406 CAL7864463.1 unnamed protein product [Sarcocystis calchasi] diamond 837 80.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Sarcocystis Sarcocystis calchasi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;