RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1103784", tax_clade = "PVC group" and tax_phylum = "Planctomycetota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA1103784 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11690850 11690850 PRJNA1103784_P_NODE_5450_length_254_cov_1.287293_g5395_i0 PRJNA1103784 5450 254 1.287293 3.26972422 Planctomycetota bacterium 2026780 Bacteria Bacteria 149 1.87e-40   NR MEY4831052.1 2026780 g5395 i0 84.1 21.2952755905512 82 13 96.9 0 252 7 357 438 MEY4831052.1 adenosylhomocysteinase [Planctomycetota bacterium] diamond 5409 149 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
23164456 23164456 PRJNA1103784_P_NODE_4239_length_277_cov_1.803922_g4184_i0 PRJNA1103784 4239 277 1.803922 4.99686394 Humisphaera borealis 2807512 Bacteria Bacteria 370 6.19e-98   NTclustered gi|1927742986|gb|CP063458.1| 2807512 g4184 i0 90.714 228.285198555957 280 22 100 4 1 277 5063287 5063009 Humisphaera borealis strain M1803 chromosome, complete genome blastn 63235 370 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Tepidisphaerales Tepidisphaeraceae Humisphaera Humisphaera borealis
31553298 31553298 PRJNA1103784_P_NODE_3676_length_290_cov_1.082949_g3621_i0 PRJNA1103784 3676 290 1.082949 3.1405521 Novipirellula caenicola 1536901 Bacteria Bacteria 68.2 7.71e-11   NR WP_345683361.1 1536901 g3621 i0 44.3 1.98620689655172 97 51 98.3 3 290 6 822 917 WP_345683361.1 Calx-beta domain-containing protein [Novipirellula caenicola] diamond 576 68.2 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Novipirellula Novipirellula caenicola

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;