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contig_metadata

7 rows where bioproject = "PRJNA1102048", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 7 ✖

tax_kingdom 1

  • Pseudomonadati · 7 ✖

bioproject 1

  • PRJNA1102048 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27067565 27067565 PRJNA1102048_P_NODE_12462_length_252_cov_1.720670_g12358_i0 PRJNA1102048 12462 252 1.72067 4.3360884 Leptospiraceae bacterium 2026757 Bacteria Bacteria 48.5 7.23e-5   NR MDX1958743.1 2026757 g12358 i0 34.9 0.988095238095238 83 52 98.8 1 251 3 14 94 MDX1958743.1 Hpt domain-containing protein [Leptospiraceae bacterium] diamond 249 48.5 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae   Leptospiraceae bacterium
27564269 27564269 PRJNA1102048_P_NODE_6484_length_339_cov_1.157895_g6380_i0 PRJNA1102048 6484 339 1.157895 3.92526405 root 1 Root_unresolved Root_unresolved 72 1.35e-12   NR MBP5447817.1 166 g6380 i0 47 4.63716814159292 66 32 56.6 2 324 133 70 134 MBP5447817.1 hypothetical protein [Treponema sp.] diamond 1572 72.4 0.994475138121547 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.
29909876 29909876 PRJNA1102048_P_NODE_8891_length_291_cov_1.990826_g8787_i0 PRJNA1102048 8891 291 1.990826 5.79330366 Treponema sp. 166 Bacteria Bacteria 43.9 0.0254   NR MDR2103721.1 166 g8787 i0 32.9 0.721649484536082 70 43 71.1 2 6 212 556 622 MDR2103721.1 phosphatidylglycerol lysyltransferase [Treponema sp.] diamond 210 43.9 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.
30384035 30384035 PRJNA1102048_P_NODE_16953_length_242_cov_1.473373_g16849_i0 PRJNA1102048 16953 242 1.473373 3.56556266 Spirochaetota bacterium 2202144 Bacteria Bacteria 69.3 1.52e-11   NR MCL1864951.1 2202144 g16849 i0 50 0.91735537190082606 74 32 85.5 1 1 207 161 234 MCL1864951.1 hypothetical protein [Spirochaetota bacterium] diamond 222 69.3 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
30541582 30541582 PRJNA1102048_P_NODE_5953_length_354_cov_0.982206_g5849_i0 PRJNA1102048 5953 354 0.982206 3.47700924 Leptospira wolffii 409998 Bacteria Bacteria 67 4.11e-10   NR WP_210414470.1 409998 g5849 i0 55.6 0.457627118644068 54 24 45.8 0 193 354 83 136 WP_210414470.1 alpha/beta fold hydrolase [Leptospira wolffii] diamond 162 67 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira wolffii
31141530 31141530 PRJNA1102048_P_NODE_10475_length_273_cov_1.405000_g10371_i0 PRJNA1102048 10475 273 1.405 3.83565 Spirochaetota bacterium 2202144 Bacteria Bacteria 52.8 1.51e-5   NR MCX7680256.1 2202144 g10371 i0 36.4 1.96703296703297 88 54 96.7 1 264 1 182 267 MCX7680256.1 DUF2804 domain-containing protein [Spirochaetota bacterium] diamond 537 52.8 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
31521530 31521530 PRJNA1102048_P_NODE_15756_length_245_cov_0.895349_g15652_i0 PRJNA1102048 15756 245 0.895349 2.19360505 Brachyspira aalborgi 29522 Bacteria Bacteria 68.2 3.21e-11   NR WP_302368436.1 29522 g15652 i0 43.1 2.8530612244898 72 41 88.2 0 5 220 25 96 WP_302368436.1 Gfo/Idh/MocA family protein [Brachyspira aalborgi] diamond 699 68.2 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Brachyspirales Brachyspiraceae Brachyspira Brachyspira aalborgi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;