contig_metadata
5 rows where bioproject = "PRJNA1102048", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 6123078 | 6123078 | PRJNA1102048_P_NODE_17965_length_237_cov_3.030488_g17861_i0 | PRJNA1102048 | 17965 | 237 | 3.030488 | 7.18225656 | Helicobacter | 209 | Bacteria | Bacteria | 63.9 | 9.83e-6 | NTclustered | gi|2288874529|dbj|AP026684.1| | 35817 | g17861 | i0 | 93.023 | 0.362869198312236 | 43 | 3 | 18 | 0 | 182 | 224 | 1184498 | 1184540 | Helicobacter heilmannii ASB1 DNA, complete genome | blastn | 86 | 63.9 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Helicobacteraceae | Helicobacter | Helicobacter heilmannii | ||
| 12498823 | 12498823 | PRJNA1102048_P_NODE_16050_length_244_cov_0.900585_g15946_i0 | PRJNA1102048 | 16050 | 244 | 0.900585 | 2.1974274 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 63.9 | 1.02e-5 | NTclustered | gi|2642539130|gb|CP078819.1| | 210 | g15946 | i0 | 100 | 6.19262295081967 | 34 | 0 | 14 | 0 | 1 | 34 | 7708 | 7675 | Helicobacter pylori strain HpGP-JOR-001 chromosome, complete genome | blastn | 1511 | 63.9 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Helicobacteraceae | Helicobacter | Helicobacter pylori | ||
| 15047701 | 15047701 | PRJNA1102048_P_NODE_6612_length_336_cov_1.703422_g6508_i0 | PRJNA1102048 | 6612 | 336 | 1.703422 | 5.72349792 | root | 1 | Root_unresolved | Root_unresolved | 60.2 | 1.89e-4 | NTclustered | gi|2641454253|gb|CP078941.1| | 210 | g6508 | i0 | 94.737 | 5.94642857142857 | 38 | 2 | 11 | 0 | 20 | 57 | 1398995 | 1398958 | Helicobacter pylori strain HpGP-COL-306 chromosome, complete genome | blastn | 1998 | 60.2 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Helicobacteraceae | Helicobacter | Helicobacter pylori | ||
| 29719957 | 29719957 | PRJNA1102048_P_NODE_1230_length_681_cov_2.444079_g1132_i0 | PRJNA1102048 | 1230 | 681 | 2.444079 | 16.64417799 | Sulfurimonas sp. | 2022749 | Bacteria | Bacteria | 105 | 2.5600000000000003e-22 | NR | MDD2789235.1 | 2022749 | g1132 | i0 | 40.5 | 0.674008810572687 | 153 | 84 | 64.3 | 4 | 664 | 227 | 258 | 410 | MDD2789235.1 hypothetical protein [Sulfurimonas sp.] | diamond | 459 | 105 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Sulfurimonadaceae | Sulfurimonas | Sulfurimonas sp. | ||
| 31363404 | 31363404 | PRJNA1102048_P_NODE_10496_length_273_cov_1.020000_g10392_i0 | PRJNA1102048 | 10496 | 273 | 1.02 | 2.7846 | Campylobacterota bacterium | 2026809 | Bacteria | Bacteria | 64.3 | 9.78e-10 | NR | MCL4431196.1 | 2026809 | g10392 | i0 | 44.7 | 0.835164835164835 | 76 | 41 | 83.5 | 1 | 44 | 271 | 2 | 76 | MCL4431196.1 hypothetical protein [Campylobacterota bacterium] | diamond | 228 | 64.3 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Campylobacterota bacterium |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;