RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA1102048", tax_clade = "ac1 cluster" and tax_kingdom = "Bacillati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Bacillati · 1 ✖

tax_clade 1

  • ac1 cluster · 1 ✖

bioproject 1

  • PRJNA1102048 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30248800 30248800 PRJNA1102048_P_NODE_17652_length_241_cov_0.916667_g17548_i0 PRJNA1102048 17652 241 0.916667 2.20916747 Clavibacter 1573 Bacteria Bacteria 160 1.01e-44   NR KRO31545.1 1655572 g17548 i0 100 4.9792531120332 80 0 99.6 0 240 1 77 156 KRO31545.1 MAG: DNA helicase, partial [Actinobacteria bacterium BACL2 MAG-121001-bin67] diamond 1200 160 1 Bacteria ac1 cluster Bacillati Actinomycetota Actinomycetes       Actinobacteria bacterium BACL2 MAG-121001-bin67

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;