RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1102048" and tax_clade = "SAR86 cluster"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • SAR86 cluster · 2 ✖

bioproject 1

  • PRJNA1102048 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30889190 30889190 PRJNA1102048_P_NODE_13774_length_249_cov_0.875000_g13670_i0 PRJNA1102048 13774 249 0.875 2.17875 SAR86 cluster bacterium 2030880 Bacteria Bacteria 152 9.1e-42   NR PCI81672.1 2030880 g13670 i0 86.6 10.8795180722892 82 11 98.8 0 4 249 393 474 PCI81672.1 MAG: dihydrolipoyl dehydrogenase [SAR86 cluster bacterium] diamond 2709 152 1 Bacteria SAR86 cluster Pseudomonadati Pseudomonadota Gammaproteobacteria       SAR86 cluster bacterium
31742684 31742684 PRJNA1102048_P_NODE_5057_length_381_cov_3.847403_g4953_i0 PRJNA1102048 5057 381 3.847403 14.65860543 SAR86 cluster bacterium 2030880 Bacteria Bacteria 201 6.18e-61   NR MDG2060531.1 2030880 g4953 i0 76.2 0.992125984251969 126 30 99.2 0 379 2 237 362 MDG2060531.1 acetyl-CoA C-acetyltransferase [SAR86 cluster bacterium] diamond 378 201 1 Bacteria SAR86 cluster Pseudomonadati Pseudomonadota Gammaproteobacteria       SAR86 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;