RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1102048", tax_clade = "Opisthokonta" and tax_phylum = "Olpidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Olpidiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA1102048 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6589821 6589821 PRJNA1102048_P_NODE_17466_length_241_cov_1.458333_g17362_i0 PRJNA1102048 17466 241 1.458333 3.51458253 Olpidium bornovanus 278681 Fungi Fungi 115 7.58e-28   NR BAL15351.1 278681 g17362 i0 68.8 0.995850622406639 80 25 99.6 0 1 240 233 312 BAL15351.1 translation elongation factor 2, partial [Olpidium bornovanus] diamond 240 115 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus
27225522 27225522 PRJNA1102048_P_NODE_16963_length_242_cov_1.366864_g16859_i0 PRJNA1102048 16963 242 1.366864 3.30781088 Olpidium bornovanus 278681 Fungi Fungi 56.6 3.71e-7   NR KAG5460822.1 278681 g16859 i0 47.7 4.8595041322314 65 30 80.6 2 2 196 216 276 KAG5460822.1 MAG: PABPC4 protein variant [Olpidium bornovanus] diamond 1176 56.6 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;