RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA1102048" and tax_clade = "OMG group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • OMG group · 2 ✖

bioproject 1

  • PRJNA1102048 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27478477 27478477 PRJNA1102048_P_NODE_9263_length_287_cov_1.266355_g9159_i0 PRJNA1102048 9263 287 1.266355 3.63443885 OM182 bacterium BACL3 MAG-12 2510334 Bacteria Bacteria 149 3.459999999999999e-43   NR KRO80840.1 1655593 g9159 i0 96.1 0.804878048780488 77 3 80.5 0 56 286 1 77 KRO80840.1 MAG: RNA polymerase subunit sigma [OM182 bacterium BACL3 MAG-120619-bin3] diamond 231 149 1 Bacteria OMG group Pseudomonadati Pseudomonadota Gammaproteobacteria       OM182 bacterium BACL3 MAG-120619-bin3
29593534 29593534 PRJNA1102048_P_NODE_17070_length_242_cov_0.911243_g16966_i0 PRJNA1102048 17070 242 0.911243 2.20520806 OM182 bacterium 2510334 Bacteria Bacteria 164 2.38e-48   NR MDO7640183.1 2510334 g16966 i0 95 4.95867768595041 80 4 99.2 0 1 240 10 89 MDO7640183.1 PQQ-binding-like beta-propeller repeat protein [OM182 bacterium] diamond 1200 164 1 Bacteria OMG group Pseudomonadati Pseudomonadota Gammaproteobacteria       OM182 bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;