RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1102048", tax_clade = "FCB group" and tax_phylum = "Ignavibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA1102048 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27225523 27225523 PRJNA1102048_P_NODE_17423_length_241_cov_1.833333_g17319_i0 PRJNA1102048 17423 241 1.833333 4.41833253 Melioribacteraceae bacterium 2614255 Bacteria Bacteria 50.8 1.2e-5   NR MDZ7764611.1 2614255 g17319 i0 42.6 0.672199170124481 54 31 67.2 0 206 45 10 63 MDZ7764611.1 DUF1761 domain-containing protein [Melioribacteraceae bacterium] diamond 162 50.8 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Melioribacteraceae   Melioribacteraceae bacterium
30067600 30067600 PRJNA1102048_P_NODE_15252_length_246_cov_0.890173_g15148_i0 PRJNA1102048 15252 246 0.890173 2.18982558 Ignavibacteria bacterium 2053306 Bacteria Bacteria 60.5 2.31e-8   NR MBM4150960.1 2053306 g15148 i0 73.2 0.5 41 11 50 0 123 1 33 73 MBM4150960.1 T9SS type A sorting domain-containing protein [Ignavibacteria bacterium] diamond 123 60.5 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
31702470 31702470 PRJNA1102048_P_NODE_13257_length_250_cov_0.870056_g13153_i0 PRJNA1102048 13257 250 0.870056 2.17514 Pseudomonadati 3379134 Bacteria Bacteria 156 6.21e-44   NR MFN5112814.1 2053306 g13153 i0 97.6 2.988 83 2 99.6 0 1 249 42 124 MFN5112814.1 hypothetical protein [Ignavibacteria bacterium] diamond 747 156 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;