RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1102048", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Peregrinibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Peregrinibacteriota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA1102048 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27036041 27036041 PRJNA1102048_P_NODE_16502_length_243_cov_0.905882_g16398_i0 PRJNA1102048 16502 243 0.905882 2.20129326 Candidatus Peregrinibacteria bacterium 2030811 Bacteria Bacteria 50.4 7.23e-5   NR MBM3230852.1 2030811 g16398 i0 59.5 0.45679012345679 37 15 45.7 0 7 117 464 500 MBM3230852.1 tetratricopeptide repeat protein [Candidatus Peregrinibacteria bacterium] diamond 111 50.4 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota         Candidatus Peregrinibacteria bacterium
27888811 27888811 PRJNA1102048_P_NODE_10525_length_272_cov_1.547739_g10421_i0 PRJNA1102048 10525 272 1.547739 4.20985008 Candidatus Peregrinibacteria bacterium 2030811 Bacteria Bacteria 114 7.17e-28   NR MBN1258991.1 2030811 g10421 i0 62.3 2.79044117647059 77 29 84.9 0 271 41 138 214 MBN1258991.1 pyridoxal phosphate-dependent aminotransferase [Candidatus Peregrinibacteria bacterium] diamond 759 114 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota         Candidatus Peregrinibacteria bacterium
29372950 29372950 PRJNA1102048_P_NODE_16469_length_243_cov_1.305882_g16365_i0 PRJNA1102048 16469 243 1.305882 3.17329326 Candidatus Peregrinibacteria bacterium 2030811 Bacteria Bacteria 100 1.2299999999999997e-23   NR MBI5413010.1 2030811 g16365 i0 60 0.987654320987654 80 32 98.8 0 242 3 44 123 MBI5413010.1 uridine phosphorylase [Candidatus Peregrinibacteria bacterium] diamond 240 100 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota         Candidatus Peregrinibacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;