RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1102048", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 2 ✖

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA1102048 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26655932 26655932 PRJNA1102048_P_NODE_7281_length_321_cov_1.641129_g7177_i0 PRJNA1102048 7281 321 1.641129 5.26802409 Copromyxa protea 931554 Tubulinea other_Eukaryota 147 1.71e-39   NR BAN33737.1 931554 g7177 i0 76.9 7.7196261682243 91 21 85 0 273 1 4 94 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 2478 147 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
29341443 29341443 PRJNA1102048_P_NODE_7149_length_324_cov_1.051793_g7045_i0 PRJNA1102048 7149 324 1.051793 3.40780932 Amoeba proteus 5775 Tubulinea other_Eukaryota 73.9 4.44e-13   NR AKN09692.1 5775 g7045 i0 39.4 0.962962962962963 104 62 96.3 1 12 323 171 273 AKN09692.1 Tom40 [Amoeba proteus] diamond 312 73.9 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;