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contig_metadata

33 rows where bioproject = "PRJNA1101946" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 33 ✖

bioproject 1

  • PRJNA1101946 · 33 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1485955 1485955 PRJNA1101946_S_NODE_6882_length_282_cov_5.278970_g6783_i0 PRJNA1101946 6882 282 5.27897 14.8866954 Pestivirus brazilense 3052620 Viruses Viruses 427 3.7e-115   NTclustered gi|2813517655|gb|PQ362005.1| 381707 g6783 i0 96.863 27.6382978723404 255 8 90 0 1 255 10053 10307 Bovine viral diarrhea virus 3 isolate HN2247, partial genome blastn 7794 427 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus brazilense
2761939 2761939 PRJNA1101946_S_NODE_14643_length_210_cov_6.850932_g14544_i0 PRJNA1101946 14643 210 6.850932 14.3869572 Carlavirus latensdianthi 3427766 Viruses Viruses 54.7 0.005   NTclustered gi|1995060321|gb|MN450069.1| 12164 g14544 i0 100 0.671428571428571 29 0 14 0 1 29 13 41 Carnation latent virus isolate KL, complete genome blastn 141 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
4038015 4038015 PRJNA1101946_S_NODE_5504_length_303_cov_2.425197_g5405_i0 PRJNA1101946 5504 303 2.425197 7.34834691 Carlavirus latensdianthi 3427766 Viruses Viruses 52.8 0.028   NTclustered gi|1995060321|gb|MN450069.1| 12164 g5405 i0 100 0.0924092409240924 28 0 9 0 1 28 14 41 Carnation latent virus isolate KL, complete genome blastn 28 52.8 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
4038028 4038028 PRJNA1101946_S_NODE_8064_length_268_cov_4.105023_g7965_i0 PRJNA1101946 8064 268 4.105023 11.00146164 Carlavirus latensdianthi 3427766 Viruses Viruses 56.5 0.002   NTclustered gi|1995060321|gb|MN450069.1| 12164 g7965 i0 100 0.529850746268657 30 0 11 0 1 30 13 42 Carnation latent virus isolate KL, complete genome blastn 142 56.5 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
6589394 6589394 PRJNA1101946_S_NODE_4086_length_328_cov_6.150538_g3987_i0 PRJNA1101946 4086 328 6.150538 20.17376464 Pestivirus brazilense 3052620 Viruses Viruses 573 5.329999999999998e-159   NTclustered gi|2813517653|gb|PQ362004.1| 381707 g3987 i0 98.171 30.9298780487805 328 6 100 0 1 328 9865 9538 Bovine viral diarrhea virus 3 isolate HN2168, partial genome blastn 10145 573 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus brazilense
6589407 6589407 PRJNA1101946_S_NODE_6646_length_285_cov_6.177966_g6547_i0 PRJNA1101946 6646 285 6.177966 17.6072031 Pestivirus brazilense 3052620 Viruses Viruses 494 3.64e-135   NTclustered gi|2813517649|gb|PQ362002.1| 381707 g6547 i0 97.895 29.9754385964912 285 6 100 0 1 285 8166 7882 Bovine viral diarrhea virus 3 isolate HN2009, partial genome blastn 8543 494 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus brazilense
7863943 7863943 PRJNA1101946_S_NODE_10667_length_241_cov_3.890625_g10568_i0 PRJNA1101946 10667 241 3.890625 9.37640625 Pestivirus brazilense 3052620 Viruses Viruses 409 1.12e-109   NTclustered gi|1569124192|gb|MH410816.1| 381707 g10568 i0 97.49 28.6514522821577 239 6 99 0 1 239 4337 4575 Bovine viral diarrhea virus 3 isolate LV03/12, complete genome blastn 6905 409 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus brazilense
7863995 7863995 PRJNA1101946_S_NODE_8747_length_260_cov_6.563981_g8648_i0 PRJNA1101946 8747 260 6.563981 17.0663506 Caudoviricetes sp. 2832643 Viruses Viruses 477 3.3e-130   NTclustered gi|2057961319|tpg|BK046393.1| 2832643 g8648 i0 100 5.95384615384615 258 0 99 0 3 260 48071 48328 MAG TPA_asm: Caudoviricetes sp. isolate ct5v45, partial genome blastn 1548 477 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
9138875 9138875 PRJNA1101946_S_NODE_18928_length_185_cov_2.867647_g18829_i0 PRJNA1101946 18928 185 2.867647 5.30514695 Carlavirus latensdianthi 3427766 Viruses Viruses 54.7 0.004   NTclustered gi|1995060321|gb|MN450069.1| 12164 g18829 i0 100 0.762162162162162 29 0 16 0 157 185 41 13 Carnation latent virus isolate KL, complete genome blastn 141 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
10414634 10414634 PRJNA1101946_S_NODE_13189_length_221_cov_1.093023_g13090_i0 PRJNA1101946 13189 221 1.093023 2.41558083 Caudoviricetes sp. 2832643 Viruses Viruses 298 2.28e-76   NTclustered gi|2914805849|gb|OR221524.1| 2832643 g13090 i0 99.39 10.710407239819 164 1 74 0 1 164 43068 43231 MAG: Caudoviricetes sp. isolate MSP1557 genomic sequence blastn 2367 298 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
11689953 11689953 PRJNA1101946_S_NODE_14990_length_208_cov_2.245283_g14891_i0 PRJNA1101946 14990 208 2.245283 4.67018864 Porcine bastrovirus 2588662 Viruses Viruses 54.7 0.005   NTclustered gi|1682068313|gb|MK387176.1| 2588662 g14891 i0 100 0.274038461538462 29 0 14 0 180 208 41 13 Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome blastn 57 54.7 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Porcine bastrovirus
14240014 14240014 PRJNA1101946_S_NODE_11552_length_233_cov_38.652174_g11453_i0 PRJNA1101946 11552 233 38.652174 90.05956542 Betapolyomavirus macacae 1891767 Viruses Viruses 193 1.18e-44   NTclustered gi|6760251|gb|AF180739.1| 1891767 g11453 i0 90.21 0.613733905579399 143 14 61 0 15 157 144 2 Simian virus 40 strain MC-028863B-2 large t antigen gene, partial cds blastn 143 193 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae
15513888 15513888 PRJNA1101946_S_NODE_13153_length_221_cov_3.761628_g13054_i0 PRJNA1101946 13153 221 3.761628 8.31319788 Carlavirus latensdianthi 3427766 Viruses Viruses 54.7 0.005   NTclustered gi|1995060321|gb|MN450069.1| 12164 g13054 i0 100 0.638009049773756 29 0 13 0 193 221 41 13 Carnation latent virus isolate KL, complete genome blastn 141 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
15513943 15513943 PRJNA1101946_S_NODE_8793_length_260_cov_2.658768_g8694_i0 PRJNA1101946 8793 260 2.658768 6.9127968 Pestivirus brazilense 3052620 Viruses Viruses 420 5.64e-113   NTclustered gi|2813517649|gb|PQ362002.1| 381707 g8694 i0 95.769 28.9576923076923 260 11 100 0 1 260 4925 4666 Bovine viral diarrhea virus 3 isolate HN2009, partial genome blastn 7529 420 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus brazilense
15513945 15513945 PRJNA1101946_S_NODE_9133_length_256_cov_3.942029_g9034_i0 PRJNA1101946 9133 256 3.942029 10.09159424 Pestivirus brazilense 3052620 Viruses Viruses 435 1.98e-117   NTclustered gi|2813517649|gb|PQ362002.1| 381707 g9034 i0 97.266 30.5703125 256 7 100 0 1 256 2532 2277 Bovine viral diarrhea virus 3 isolate HN2009, partial genome blastn 7826 435 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus brazilense
19337073 19337073 PRJNA1101946_S_NODE_1796_length_408_cov_4.986072_g1697_i0 PRJNA1101946 1796 408 4.986072 20.34317376 Pestivirus brazilense 3052620 Viruses Viruses 662 0   NTclustered gi|2624695972|gb|OR827365.1| 381707 g1697 i0 96.278 29.9583333333333 403 15 99 0 1 403 8935 9337 Bovine viral diarrhea virus 3 isolate CNIM-2201, partial genome blastn 12223 662 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus brazilense
19337114 19337114 PRJNA1101946_S_NODE_8396_length_264_cov_2.586047_g8297_i0 PRJNA1101946 8396 264 2.586047 6.82716408 Orthopoxvirus monkeypox 3431483 Viruses Viruses 54.7 0.007   NTclustered gi|2309594316|gb|OP536747.1| 10244 g8297 i0 100 10.9848484848485 29 0 11 0 174 202 119274 119302 Monkeypox virus isolate 9000365, partial genome blastn 2900 54.7 1 Viruses   Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae Orthopoxvirus Orthopoxvirus monkeypox
20612475 20612475 PRJNA1101946_S_NODE_2877_length_359_cov_5.370968_g2778_i0 PRJNA1101946 2877 359 5.370968 19.28177512 Pestivirus brazilense 3052620 Viruses Viruses 608 1.609999999999999e-169   NTclustered gi|2624695972|gb|OR827365.1| 381707 g2778 i0 97.214 30.8941504178273 359 10 100 0 1 359 9293 8935 Bovine viral diarrhea virus 3 isolate CNIM-2201, partial genome blastn 11091 608 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus brazilense
22696845 22696845 PRJNA1101946_S_NODE_20738_length_177_cov_1.335938_g20639_i0 PRJNA1101946 20738 177 1.335938 2.36461026 Pestivirus 11095 Viruses Viruses 263 6.349999999999999e-66   NTclustered gi|56067118|gb|AY735486.1| 266829 g20639 i0 98.649 74.3276836158192 148 2 84 0 24 171 324 471 Pestivirus strain D32/00_HoBi nonstructural protein (Npro) gene, partial cds blastn 13156 263 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus brazilense
22696865 22696865 PRJNA1101946_S_NODE_38_length_2444_cov_59.432985_g2_i0 PRJNA1101946 38 2444 59.432985 1452.5421534 Moloney murine leukemia virus 11801 Viruses Viruses 1295 0   NR NP_057933.2 11801 g2 i0 97.6 2.42675941080196 659 16 80.9 0 2304 328 677 1335 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 5931 1295 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
24437170 24437170 PRJNA1101946_S_NODE_2960_length_357_cov_2.649351_g2861_i0 PRJNA1101946 2960 357 2.649351 9.45818307 Carlavirus latensdianthi 3427766 Viruses Viruses 54.7 0.009   NTclustered gi|1995060321|gb|MN450069.1| 12164 g2861 i0 100 0.394957983193277 29 0 8 0 1 29 13 41 Carnation latent virus isolate KL, complete genome blastn 141 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
26940976 26940976 PRJNA1101946_S_NODE_10582_length_242_cov_3.170984_g10483_i0 PRJNA1101946 10582 242 3.170984 7.67378128 Hubei permutotetra-like virus 1 1923073 Viruses Viruses 145 2.03e-38   NR YP_009337764.1 1923074 g10483 i0 88.8 0.991735537190083 80 9 99.2 0 2 241 104 183 YP_009337764.1 RdRp [Hubei permutotetra-like virus 10] diamond 240 145 1 Viruses               Hubei permutotetra-like virus 10
27320609 27320609 PRJNA1101946_S_NODE_13643_length_217_cov_15.482143_g13544_i0 PRJNA1101946 13643 217 15.482143 33.59625031 Betapolyomavirus macacae 1891767 Viruses Viruses 73.2 4.78e-13   NR AAK29054.1 1891767 g13544 i0 77.3 0.608294930875576 44 10 60.8 0 69 200 494 537 AAK29054.1 truncated large tumor antigen [Betapolyomavirus macacae] diamond 132 73.2 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae
27352372 27352372 PRJNA1101946_S_NODE_3223_length_349_cov_11.043333_g3124_i0 PRJNA1101946 3223 349 11.043333 38.54123217 Betapolyomavirus macacae 1891767 Viruses Viruses 51.6 9.49e-5   NR AAK29054.1 1891767 g3124 i0 80.6 0.26647564469914 31 6 26.6 0 348 256 507 537 AAK29054.1 truncated large tumor antigen [Betapolyomavirus macacae] diamond 93 51.6 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae
28710017 28710017 PRJNA1101946_S_NODE_9567_length_252_cov_3.674877_g9468_i0 PRJNA1101946 9567 252 3.674877 9.26069004 Erythrocytic necrosis virus 1543320 Viruses Viruses 72.8 7.32e-15   NR QCF47522.1 1543320 g9468 i0 80.5 0.976190476190476 41 8 48.8 0 38 160 27 67 QCF47522.1 hypothetical protein, partial [Erythrocytic necrosis virus] diamond 246 72.8 1 Viruses   Bamfordvirae Nucleocytoviricota Megaviricetes Pimascovirales Iridoviridae   Erythrocytic necrosis virus
28994296 28994296 PRJNA1101946_S_NODE_17588_length_192_cov_3.209790_g17489_i0 PRJNA1101946 17588 192 3.20979 6.1627968 Betapolyomavirus macacae 1891767 Viruses Viruses 53.1 4.11e-6   NR AAK29054.1 1891767 g17489 i0 61.4 2.4375 44 17 68.8 0 22 153 494 537 AAK29054.1 truncated large tumor antigen [Betapolyomavirus macacae] diamond 468 53.1 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae
29688331 29688331 PRJNA1101946_S_NODE_24110_length_164_cov_2.800000_g24011_i0 PRJNA1101946 24110 164 2.8 4.592 Betapolyomavirus macacae 1891767 Viruses Viruses 43.1 0.0094   NR AAK29054.1 1891767 g24011 i0 70 3.03658536585366 30 9 54.9 0 90 1 498 527 AAK29054.1 truncated large tumor antigen [Betapolyomavirus macacae] diamond 498 43.1 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae
31015507 31015507 PRJNA1101946_S_NODE_8015_length_268_cov_14.981735_g7916_i0 PRJNA1101946 8015 268 14.981735 40.1510498 Betapolyomavirus macacae 1891767 Viruses Viruses 65.1 6.83e-10   NR AAK29054.1 1891767 g7916 i0 75 0.492537313432836 44 11 49.3 0 174 43 494 537 AAK29054.1 truncated large tumor antigen [Betapolyomavirus macacae] diamond 132 65.1 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae
31386328 31386328 PRJNA1101946_S_NODE_25656_length_159_cov_5.854545_g25557_i0 PRJNA1101946 25656 159 5.854545 9.30872655 root 1 Root_unresolved Root_unresolved 44.3 0.00112   NR AAS20328.1 1891767 g25557 i0 52.6 2.18867924528302 38 17 71.7 1 45 158 76 112 AAS20328.1 large tumor antigen, partial [Betapolyomavirus macacae] diamond 348 44.3 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae
31426466 31426466 PRJNA1101946_S_NODE_15936_length_201_cov_14.881579_g15837_i0 PRJNA1101946 15936 201 14.881579 29.91197379 Betapolyomavirus macacae 1891767 Viruses Viruses 50.4 1.88e-6   NR AAF28272.1 1891767 g15837 i0 55.1 3.14925373134328 49 21 73.1 1 161 15 7 54 AAF28272.1 large t antigen, partial [Betapolyomavirus macacae] diamond 633 50.4 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae
31553259 31553259 PRJNA1101946_S_NODE_18256_length_188_cov_17.870504_g18157_i0 PRJNA1101946 18256 188 17.870504 33.59654752 Betapolyomavirus macacae 1891767 Viruses Viruses 64.3 4.34e-10   NR AAK29054.1 1891767 g18157 i0 80 0.638297872340426 40 8 63.8 0 120 1 494 533 AAK29054.1 truncated large tumor antigen [Betapolyomavirus macacae] diamond 120 64.3 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae
32628213 32628213 PRJNA1101946_S_NODE_8020_length_268_cov_11.401826_g7921_i0 PRJNA1101946 8020 268 11.401826 30.55689368 Betapolyomavirus macacae 1891767 Viruses Viruses 65.1 6.57e-10   NR AAK29054.1 1891767 g7921 i0 70.5 0.92910447761194 44 13 49.3 0 200 69 494 537 AAK29054.1 truncated large tumor antigen [Betapolyomavirus macacae] diamond 249 65.1 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae
32691237 32691237 PRJNA1101946_S_NODE_8140_length_267_cov_4.224771_g8041_i0 PRJNA1101946 8140 267 4.224771 11.28013857 Betapolyomavirus macacae 1891767 Viruses Viruses 51.2 5.18e-5   NR AAK29054.1 1891767 g8041 i0 73 0.415730337078652 37 10 41.6 0 267 157 501 537 AAK29054.1 truncated large tumor antigen [Betapolyomavirus macacae] diamond 111 51.2 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;