RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1101946" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1101946 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1485929 1485929 PRJNA1101946_S_NODE_1862_length_403_cov_162.672316_g1763_i0 PRJNA1101946 1862 403 162.672316 655.56943348 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 115 4.860000000000001e-21   NTclustered gi|325194684|emb|FR825494.1| 890382 g1763 i0 79.096 34.6178660049628 177 30 43 7 199 372 202 30 Albugo laibachii Nc14, genomic contig CONTIG_2365_NC14_v4_847_33331 blastn 13951 115 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
28046770 28046770 PRJNA1101946_S_NODE_20705_length_177_cov_1.992188_g20606_i0 PRJNA1101946 20705 177 1.992188 3.52617276 Phytophthora nicotianae P1 4792 SAR_Eukaryotes SAR_Eukaryotes 40 0.0428   NR ETP47916.1 1317064 g20606 i0 32.7 0.88135593220339 52 33 84.7 1 160 11 43 94 ETP47916.1 hypothetical protein F442_06180, partial [Phytophthora nicotianae P10297] diamond 156 40 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;