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contig_metadata

8 rows where bioproject = "PRJNA1101946" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1101946 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2761934 2761934 PRJNA1101946_S_NODE_12363_length_227_cov_2.005618_g12264_i0 PRJNA1101946 12363 227 2.005618 4.55275286 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.02   NTclustered gi|1557394408|emb|LR031564.1| 45931 g12264 i0 100 0.123348017621145 28 0 12 0 200 227 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
7863947 7863947 PRJNA1101946_S_NODE_11587_length_233_cov_6.695652_g11488_i0 PRJNA1101946 11587 233 6.695652 15.60086916 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.021   NTclustered gi|1557394408|emb|LR031564.1| 45931 g11488 i0 100 0.120171673819742 28 0 12 0 206 233 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
10414653 10414653 PRJNA1101946_S_NODE_20429_length_178_cov_2.852713_g20330_i0 PRJNA1101946 20429 178 2.852713 5.07782914 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.015   NTclustered gi|1557394408|emb|LR031564.1| 45931 g20330 i0 100 0.157303370786517 28 0 16 0 151 178 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
11223325 11223325 PRJNA1101946_S_NODE_229_length_773_cov_254.701657_g168_i0 PRJNA1101946 229 773 254.701657 1968.84380861 Metazoa 33208 Nematoda Nematoda 167 2.65e-36   NTclustered gi|158821894|gb|EU195958.1| 473172 g168 i0 92.982 14.8266494178525 114 8 15 0 168 281 2005 1892 Protorhabditis sp. JB122 28S ribosomal RNA gene, partial sequence blastn 11461 167 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Protorhabditis Protorhabditis sp. JB122
11689947 11689947 PRJNA1101946_S_NODE_13870_length_216_cov_2.125749_g13771_i0 PRJNA1101946 13870 216 2.125749 4.59161784 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.019   NTclustered gi|1557394408|emb|LR031564.1| 45931 g13771 i0 100 0.12962962962963 28 0 13 0 189 216 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
24437160 24437160 PRJNA1101946_S_NODE_20120_length_179_cov_8.707692_g20021_i0 PRJNA1101946 20120 179 8.707692 15.58676868 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.015   NTclustered gi|1557394408|emb|LR031564.1| 45931 g20021 i0 100 0.156424581005587 28 0 16 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
28227282 28227282 PRJNA1101946_S_NODE_22346_length_170_cov_3.851240_g22247_i0 PRJNA1101946 22346 170 3.85124 6.547108 Opisthokonta 33154 Nematoda Nematoda 84 9.67e-19   NR VDM47849.1 6265 g22247 i0 76.8 55.3058823529412 56 13 98.8 0 168 1 74 129 VDM47849.1 unnamed protein product [Toxocara canis] diamond 9402 84 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
32659619 32659619 PRJNA1101946_S_NODE_12900_length_223_cov_2.931034_g12801_i0 PRJNA1101946 12900 223 2.931034 6.53620582 Haemonchus contortus 6289 Nematoda Nematoda 45.4 0.00308   NR XGW12132.1 6289 g12801 i0 46.3 0.551569506726457 41 17 48.4 1 187 80 207 247 XGW12132.1 hypothetical protein V3C99_013090 [Haemonchus contortus] diamond 123 45.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Haemonchus Haemonchus contortus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;