RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1101946" and tax_phylum = "Chytridiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1101946 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1019880 1019880 PRJNA1101946_S_NODE_9561_length_252_cov_4.019704_g9462_i0 PRJNA1101946 9561 252 4.019704 10.12965408 Eukaryota 2759 Fungi Fungi 113 2.06e-27   NR TPX51030.1 286115 g9462 i0 59 4.96428571428571 83 34 98.8 0 4 252 370 452 TPX51030.1 hypothetical protein SeMB42_g02037 [Synchytrium endobioticum] diamond 1251 114 0.991228070175439 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium endobioticum
14240028 14240028 PRJNA1101946_S_NODE_18972_length_185_cov_1.125000_g18873_i0 PRJNA1101946 18972 185 1.125 2.08125 Phlyctochytrium planicorne 261098 Fungi Fungi 87.9 4.33e-13   NTclustered gi|1866582538|gb|MT730713.1| 261098 g18873 i0 93.22 27.9081081081081 59 4 32 0 82 140 2617 2675 Phlyctochytrium planicorne isolate JEL0388 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 5163 87.9 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Phlyctochytrium Phlyctochytrium planicorne

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;