RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1101946", tax_phylum = "Campylobacterota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1101946 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29964261 29964261 PRJNA1101946_S_NODE_11851_length_231_cov_3.241758_g11752_i0 PRJNA1101946 11851 231 3.241758 7.48846098 root 1 Root_unresolved Root_unresolved 52 4.83e-6   NR GAA9396157.1 210 g11752 i0 46.8 8.12987012987013 79 35 96.1 3 224 3 38 114 GAA9396157.1 hypothetical protein BTM418_15410 [Helicobacter pylori] diamond 1878 52 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31110118 31110118 PRJNA1101946_S_NODE_2795_length_362_cov_5.645367_g2696_i0 PRJNA1101946 2795 362 5.645367 20.43622854 Helicobacter pylori 210 Bacteria Bacteria 56.2 9.43e-8   NR GAA9043165.1 210 g2696 i0 59.5 1.33425414364641 42 17 34.8 0 15 140 31 72 GAA9043165.1 hypothetical protein Kyoto184A_02530 [Helicobacter pylori] diamond 483 56.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32470708 32470708 PRJNA1101946_S_NODE_18599_length_187_cov_1.630435_g18500_i0 PRJNA1101946 18599 187 1.630435 3.04891345 Helicobacter pylori 210 Bacteria Bacteria 61.2 4.25e-10   NR GAA8565231.1 210 g18500 i0 64.8 1.50802139037433 54 14 78.6 2 30 176 49 102 GAA8565231.1 hypothetical protein oki142_14730 [Helicobacter pylori] diamond 282 61.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;