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contig_metadata

30 rows where bioproject = "PRJNA1101946" and tax_phylum = "Bacteroidota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 30 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1101946 · 30 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1019803 1019803 PRJNA1101946_S_NODE_14721_length_210_cov_1.900621_g14622_i0 PRJNA1101946 14721 210 1.900621 3.9913041 Dysgonomonas 156973 Bacteria Bacteria 272 1.3e-68   NTclustered gi|1821115267|gb|CP049857.1| 2714926 g14622 i0 90.431 213.009523809524 209 16 99 4 1 207 349538 349744 Dysgonomonas sp. HDW5A chromosome, complete genome blastn 44732 272 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Dysgonomonadaceae Dysgonomonas Dysgonomonas sp. HDW5A
1019823 1019823 PRJNA1101946_S_NODE_2061_length_393_cov_8.305233_g1962_i0 PRJNA1101946 2061 393 8.305233 32.63956569 Chryseobacterium 59732 Bacteria Bacteria 721 0   NTclustered gi|2429070341|gb|CP115857.1| 373672 g1962 i0 99.746 551.852417302799 393 1 100 0 1 393 2444041 2443649 Chryseobacterium gambrini strain PL22-1A chromosome, complete genome blastn 216878 726 0.993112947658402 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium gambrini
2761944 2761944 PRJNA1101946_S_NODE_1623_length_420_cov_4.409704_g1524_i0 PRJNA1101946 1623 420 4.409704 18.5207568 Flavobacterium dauae 1563479 Bacteria Bacteria 56.5 0.003   NTclustered gi|2557430891|gb|CP130821.1| 1563479 g1524 i0 100 0.0714285714285714 30 0 7 0 280 309 1161409 1161438 Flavobacterium dauae strain TCH3-2 chromosome, complete genome blastn 30 56.5 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium dauae
4037956 4037956 PRJNA1101946_S_NODE_104_length_1046_cov_9.244734_g3_i6 PRJNA1101946 104 1046 9.244734 96.69991764 Chryseobacterium gambrini 373672 Bacteria Bacteria 1882 0   NTclustered gi|2631708025|dbj|AP029022.1| 373672 g3 i6 99.14 474.63862332696 1047 7 100 2 1 1046 1782893 1783938 Chryseobacterium gambrini DW100 DNA, complete genome blastn 496472 1882 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium gambrini
4038029 4038029 PRJNA1101946_S_NODE_8384_length_264_cov_3.306977_g8285_i0 PRJNA1101946 8384 264 3.306977 8.73041928 Chryseobacterium gambrini 373672 Bacteria Bacteria 455 1.57e-123   NTclustered gi|2631708025|dbj|AP029022.1| 373672 g8285 i0 97.727 1 264 6 100 0 1 264 3420010 3420273 Chryseobacterium gambrini DW100 DNA, complete genome blastn 264 455 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium gambrini
6589381 6589381 PRJNA1101946_S_NODE_24886_length_162_cov_1.353982_g24787_i0 PRJNA1101946 24886 162 1.353982 2.19345084 Hymenobacter tibetensis 497967 Bacteria Bacteria 250 4.45e-62   NTclustered gi|2218432809|gb|CP094673.1| 497967 g24787 i0 94.444 302.487654320988 162 9 100 0 1 162 58954 58793 Hymenobacter tibetensis strain KACC 21982 plasmid unnamed4, complete sequence blastn 49003 250 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter tibetensis
7863999 7863999 PRJNA1101946_S_NODE_9427_length_253_cov_5.495098_g9328_i0 PRJNA1101946 9427 253 5.495098 13.90259794 Lacibacter sp. MH-610 3020883 Bacteria Bacteria 457 4.16e-124   NTclustered gi|2865359271|gb|CP116002.1| 3020883 g9328 i0 99.209 87.6600790513834 253 2 100 0 1 253 3295826 3296078 Lacibacter sp. MH-610 chromosome blastn 22178 457 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Lacibacter Lacibacter sp. MH-610
8673126 8673126 PRJNA1101946_S_NODE_14427_length_212_cov_2.269939_g14328_i0 PRJNA1101946 14427 212 2.269939 4.81227068 Hymenobacter 89966 Bacteria Bacteria 303 4.66e-78   NTclustered gi|586953861|gb|CP007145.1| 1227739 g14328 i0 95.789 266.433962264151 190 5 89 3 1 188 504490 504302 Hymenobacter swuensis DY53, complete genome blastn 56484 303 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter swuensis
9948066 9948066 PRJNA1101946_S_NODE_2208_length_386_cov_8.952522_g2109_i0 PRJNA1101946 2208 386 8.952522 34.55673492 Empedobacter 59734 Bacteria Bacteria 708 0   NTclustered gi|1878091573|gb|CP040908.1| 343874 g2109 i0 99.741 294.189119170984 386 1 100 0 1 386 523665 523280 Empedobacter falsenii strain 1681-1 chromosome, complete genome blastn 113557 708 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Empedobacter Empedobacter falsenii
9948100 9948100 PRJNA1101946_S_NODE_48_length_1737_cov_37.912322_g8_i0 PRJNA1101946 48 1737 37.912322 658.53703314 Sediminibacterium 504481 Bacteria Bacteria 1456 0   NTclustered gi|2690291631|dbj|AP029612.1| 1751071 g8 i0 95.987 243.427173287277 897 35 98 1 817 1712 2980392 2979496 Sediminibacterium sp. KACHI17 DNA, complete genome blastn 422833 1467 0.992501704158146 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Sediminibacterium Sediminibacterium sp. KACHI17
15047602 15047602 PRJNA1101946_S_NODE_5612_length_301_cov_4.333333_g5513_i0 PRJNA1101946 5612 301 4.333333 13.04333233 Sphingobacterium 28453 Bacteria Bacteria 551 2.2699999999999992e-152   NTclustered gi|2306435172|gb|CP094931.1| 34087 g5513 i0 99.668 436.893687707641 301 1 100 0 1 301 228986 228686 Sphingobacterium faecium strain WB1 chromosome, complete genome blastn 131505 551 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium faecium
16322405 16322405 PRJNA1101946_S_NODE_353_length_662_cov_10.515498_g3_i9 PRJNA1101946 353 662 10.515498 69.61259676 Empedobacter 59734 Bacteria Bacteria 1155 0   NTclustered gi|1878091573|gb|CP040908.1| 343874 g3 i9 98.19 413.716012084592 663 9 99 3 1 661 523235 522574 Empedobacter falsenii strain 1681-1 chromosome, complete genome blastn 273880 1155 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Empedobacter Empedobacter falsenii
16788394 16788394 PRJNA1101946_S_NODE_17574_length_192_cov_3.566434_g17475_i0 PRJNA1101946 17574 192 3.566434 6.84755328 Sphingobacteriaceae 84566 Bacteria Bacteria 123 2.15e-31   NR WP_172661121.1 363849 g17475 i0 98.4 8.859375 63 1 98.4 0 3 191 146 208 WP_172661121.1 ammonium transporter [Pedobacter panaciterrae] diamond 1701 123 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter panaciterrae
18062966 18062966 PRJNA1101946_S_NODE_435_length_626_cov_3.623917_g357_i0 PRJNA1101946 435 626 3.623917 22.68572042 Empedobacter falsenii 343874 Bacteria Bacteria 1079 0   NTclustered gi|1878091573|gb|CP040908.1| 343874 g357 i0 98.845 497.482428115016 606 5 97 2 1 606 522050 522653 Empedobacter falsenii strain 1681-1 chromosome, complete genome blastn 311424 1079 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Empedobacter Empedobacter falsenii
18871511 18871511 PRJNA1101946_S_NODE_4755_length_314_cov_24.494340_g4656_i0 PRJNA1101946 4755 314 24.49434 76.9122276 Pedobacter 84567 Bacteria Bacteria 366 9.24e-97   NTclustered gi|1717444187|gb|CP031708.1| 332999 g4656 i0 89.726 326.869426751592 292 23 92 7 27 314 3691810 3692098 Pedobacter suwonensis strain Fj_001 chromosome, complete genome blastn 102637 366 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter suwonensis
19337082 19337082 PRJNA1101946_S_NODE_2656_length_367_cov_6.022013_g2557_i0 PRJNA1101946 2656 367 6.022013 22.10078771 Hymenobacter sp. DG01 2584940 Bacteria Bacteria 619 7.62e-173   NTclustered gi|1686076296|gb|CP040936.1| 2584940 g2557 i0 97.26 307.681198910082 365 10 99 0 1 365 272773 272409 Hymenobacter sp. DG01 chromosome, complete genome blastn 112919 619 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter sp. DG01
21421939 21421939 PRJNA1101946_S_NODE_21197_length_175_cov_2.023810_g21098_i0 PRJNA1101946 21197 175 2.02381 3.5416675 Dysgonomonas 156973 Bacteria Bacteria 268 1.34e-67   NTclustered gi|1821115267|gb|CP049857.1| 2714926 g21098 i0 94.286 233.097142857143 175 10 100 0 1 175 349635 349809 Dysgonomonas sp. HDW5A chromosome, complete genome blastn 40792 268 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Dysgonomonadaceae Dysgonomonas Dysgonomonas sp. HDW5A
23163585 23163585 PRJNA1101946_S_NODE_18399_length_188_cov_2.258993_g18300_i0 PRJNA1101946 18399 188 2.258993 4.24690684 Pedobacter sp. SL55 2995161 Bacteria Bacteria 235 1.49e-57   NTclustered gi|2381133349|gb|CP113059.1| 2995161 g18300 i0 92.638 299.037234042553 163 12 87 0 1 163 1589 1751 Pedobacter sp. SL55 chromosome blastn 56219 235 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter sp. SL55
24437163 24437163 PRJNA1101946_S_NODE_23240_length_167_cov_1.728814_g23141_i0 PRJNA1101946 23240 167 1.728814 2.88711938 Chitinophagaceae bacterium 1869212 Bacteria Bacteria 265 1.65e-66   NTclustered gi|1958116195|gb|CP065012.1| 1869212 g23141 i0 97.419 118.275449101796 155 4 93 0 1 155 2394717 2394563 MAG: Chitinophagaceae bacterium isolate Rand_18-Q3-R56-63_BAT3C.147_cln chromosome, complete genome blastn 19752 265 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae   Chitinophagaceae bacterium
26624431 26624431 PRJNA1101946_S_NODE_23421_length_166_cov_4.709402_g23322_i0 PRJNA1101946 23421 166 4.709402 7.81760732 Labilibaculum sp. K2S 3056386 Bacteria Bacteria 78.2 7.39e-17   NR WP_289532364.1 3056386 g23322 i0 61.8 1.95180722891566 55 21 99.4 0 165 1 58 112 WP_289532364.1 hypothetical protein, partial [Labilibaculum sp. K2S] diamond 324 78.6 0.994910941475827 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Marinifilaceae Labilibaculum Labilibaculum sp. K2S
26655910 26655910 PRJNA1101946_S_NODE_5341_length_305_cov_3.347656_g5242_i0 PRJNA1101946 5341 305 3.347656 10.2103508 Leyella stercorea 363265 Bacteria Bacteria 185 2.739999999999999e-55   NR WP_278862324.1 363265 g5242 i0 88.1 1.98688524590164 101 12 99.3 0 1 303 240 340 WP_278862324.1 LacI family DNA-binding transcriptional regulator [Leyella stercorea] diamond 606 185 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Leyella Leyella stercorea
26846404 26846404 PRJNA1101946_S_NODE_11401_length_235_cov_1.645161_g11302_i0 PRJNA1101946 11401 235 1.645161 3.86612835 Pedobacter sp. ASV12 2795120 Bacteria Bacteria 75.1 3.06e-15   NR WP_199138737.1 2795120 g11302 i0 86.4 0.561702127659575 44 6 56.2 0 103 234 1 44 WP_199138737.1 hypothetical protein [Pedobacter sp. ASV12] diamond 132 75.1 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter sp. ASV12
27288889 27288889 PRJNA1101946_S_NODE_3643_length_338_cov_3.269896_g3544_i0 PRJNA1101946 3643 338 3.269896 11.05224848 Bacteroidota bacterium 1898104 Bacteria Bacteria 45.4 0.0107   NR MDA0728227.1 1898104 g3544 i0 39.6 0.470414201183432 53 28 43.5 2 155 301 192 244 MDA0728227.1 hypothetical protein [Bacteroidota bacterium] diamond 159 45.4 1 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
27541677 27541677 PRJNA1101946_S_NODE_13744_length_217_cov_0.910714_g13645_i0 PRJNA1101946 13744 217 0.910714 1.97624938 Asinibacterium sp. OR53 925409 Bacteria Bacteria 130 1.29e-33   NR WP_026768228.1 925409 g13645 i0 100 0.898617511520737 65 0 89.9 0 195 1 324 388 WP_026768228.1 RNA polymerase factor sigma-54 [Asinibacterium sp. OR53] diamond 195 130 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Asinibacterium Asinibacterium sp. OR53
28552126 28552126 PRJNA1101946_S_NODE_10887_length_239_cov_1.873684_g10788_i0 PRJNA1101946 10887 239 1.873684 4.47810476 Bacteroidales bacterium 2030927 Bacteria Bacteria 159 2.12e-45   NR MCI7615044.1 2030927 g10788 i0 98.7 0.99163179916318 79 1 99.2 0 2 238 301 379 MCI7615044.1 DNA recombination protein RmuC [Bacteroidales bacterium] diamond 237 159 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales     Bacteroidales bacterium
28678437 28678437 PRJNA1101946_S_NODE_6327_length_290_cov_2.199170_g6228_i0 PRJNA1101946 6327 290 2.19917 6.377593 Asinibacterium sp. OR53 925409 Bacteria Bacteria 82.8 4.86e-16   NR WP_037361201.1 925409 g6228 i0 74 0.993103448275862 96 25 99.3 0 2 289 361 456 WP_037361201.1 c-type cytochrome domain-containing protein [Asinibacterium sp. OR53] diamond 288 82.8 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Asinibacterium Asinibacterium sp. OR53
30067594 30067594 PRJNA1101946_S_NODE_9632_length_251_cov_5.158416_g9533_i0 PRJNA1101946 9632 251 5.158416 12.94762416 Pedobacter albus 3113905 Bacteria Bacteria 156 9.999999999999999e-43   NR WP_330107385.1 3113905 g9533 i0 92.8 0.99203187250996006 83 6 99.2 0 3 251 172 254 WP_330107385.1 histidine kinase N-terminal 7TM domain-containing protein [Pedobacter albus] diamond 249 156 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter albus
31354625 31354625 PRJNA1101946_S_NODE_11736_length_232_cov_3.344262_g11637_i0 PRJNA1101946 11736 232 3.344262 7.75868784 Proteiniphilum 294702 Bacteria Bacteria 53.1 5.09e-7   NR KUL19953.1 1641377 g11637 i0 96.2 1.17672413793103 26 1 33.6 0 80 3 1 26 KUL19953.1 MAG: tRNA-specific 2-thiouridylase MnmA, partial [Proteiniphilum sp. 51_7] diamond 273 53.1 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Dysgonomonadaceae Proteiniphilum Proteiniphilum sp. 51_7
31742672 31742672 PRJNA1101946_S_NODE_8677_length_261_cov_3.872642_g8578_i0 PRJNA1101946 8677 261 3.872642 10.10759562 Hydrobacter penzbergensis 1235997 Bacteria Bacteria 138 9.45e-37   NR WP_257574734.1 1235997 g8578 i0 84.7 0.977011494252874 85 13 97.7 0 5 259 51 135 WP_257574734.1 undecaprenyl-phosphate glucose phosphotransferase [Hydrobacter penzbergensis] diamond 255 138 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Hydrobacter Hydrobacter penzbergensis
32817299 32817299 PRJNA1101946_S_NODE_11400_length_235_cov_1.645161_g11301_i0 PRJNA1101946 11400 235 1.645161 3.86612835 uncultured Chryseobacterium sp. 259322 Bacteria Bacteria 152 5.79e-41   NR WP_308005465.1 259322 g11301 i0 98.7 0.982978723404255 77 1 98.3 0 233 3 735 811 WP_308005465.1 delta-60 repeat domain-containing protein [uncultured Chryseobacterium sp.] diamond 231 152 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium uncultured Chryseobacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;