RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1101946", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA1101946 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27036031 27036031 PRJNA1101946_S_NODE_12282_length_227_cov_15.157303_g12183_i0 PRJNA1101946 12282 227 15.157303 34.40707781 Longimicrobium sp. 2029185 Bacteria Bacteria 44.3 0.00747   NR HEX6374076.1 2029185 g12183 i0 40 0.594713656387665 45 27 59.5 0 135 1 125 169 HEX6374076.1 hypothetical protein [Longimicrobium sp.] diamond 135 44.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
32280870 32280870 PRJNA1101946_S_NODE_3959_length_330_cov_26.540925_g3860_i0 PRJNA1101946 3959 330 26.540925 87.5850525 Longimicrobium sp. 2029185 Bacteria Bacteria 43.9 0.0317   NR HEX6374076.1 2029185 g3860 i0 34.6 0.472727272727273 52 34 47.3 0 175 330 118 169 HEX6374076.1 hypothetical protein [Longimicrobium sp.] diamond 156 43.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;