RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1101048" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1101048 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9138829 9138829 PRJNA1101048_P_NODE_8248_length_247_cov_0.896552_g8192_i0 PRJNA1101048 8248 247 0.896552 2.21448344 Vulgatibacter incomptus 1391653 Bacteria Bacteria 102 2.19e-17   NTclustered gi|913607065|gb|CP012332.1| 1391653 g8192 i0 79.605 6.30364372469636 152 24 61 7 35 182 179834 179982 Vulgatibacter incomptus strain DSM 27710, complete genome blastn 1557 102 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Vulgatibacteraceae Vulgatibacter Vulgatibacter incomptus
29625010 29625010 PRJNA1101048_P_NODE_8110_length_248_cov_0.885714_g8054_i0 PRJNA1101048 8110 248 0.885714 2.19657072 Myxococcales bacterium 2026763 Bacteria Bacteria 43.5 0.0199   NR MCB9553437.1 2026763 g8054 i0 37.8 0.544354838709677 45 28 54.4 0 96 230 257 301 MCB9553437.1 hypothetical protein [Myxococcales bacterium] diamond 135 43.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;