RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1101048", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1101048 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1485878 1485878 PRJNA1101048_P_NODE_8382_length_246_cov_1.780347_g8326_i0 PRJNA1101048 8382 246 1.780347 4.37965362 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 180 9.77e-41   NTclustered gi|2258818259|gb|CP060220.1| 2026715 g8326 i0 95.536 122.59756097561 112 5 73 0 76 187 3250807 3250918 MAG: Pseudobdellovibrionaceae bacterium isolate HK-STAS-BDEL-7 chromosome blastn 30159 180 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
6589328 6589328 PRJNA1101048_P_NODE_6646_length_257_cov_2.494565_g6590_i0 PRJNA1101048 6646 257 2.494565 6.41103205 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 375 1.2199999999999998e-99   NTclustered gi|2895525383|gb|CP178621.1| 3394358 g6590 i0 92.996 105.618677042802 257 18 100 0 1 257 3447285 3447029 Bdellovibrio sp. HCB337 chromosome, complete genome blastn 27144 375 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337
16788356 16788356 PRJNA1101048_P_NODE_7114_length_252_cov_2.100559_g7058_i0 PRJNA1101048 7114 252 2.100559 5.29340868 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 248 2.72e-61   NTclustered gi|2800920897|gb|CP168968.1| 959 g7058 i0 89.744 131.619047619048 195 18 96 2 10 203 778119 778312 Bdellovibrio bacteriovorus strain Bd5 chromosome, complete genome blastn 33168 248 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;