RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1101048" and tax_phylum = "Acidobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1101048 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2761903 2761903 PRJNA1101048_P_NODE_5063_length_286_cov_4.915493_g5007_i0 PRJNA1101048 5063 286 4.915493 14.05830998 Holophaga foetida 35839 Bacteria Bacteria 396 1.06e-105   NTclustered gi|84452197|emb|AM180895.1| 903818 g5007 i0 93.04 180.513986013986 273 15 94 4 11 280 295 24 Holophaga foetida partial 23S rRNA gene, strain DSM 6591 blastn 51627 396 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Holophaga Holophaga foetida
7397659 7397659 PRJNA1101048_P_NODE_546_length_685_cov_13.269608_g497_i0 PRJNA1101048 546 685 13.269608 90.8968148 Holophaga 35838 Bacteria Bacteria 1125 0   NTclustered gi|2621785467|emb|OY781925.1| 188475 g497 i0 97.151 121.477372262774 667 18 97 1 20 685 242436 243102 MAG: uncultured Holophaga sp. isolate 48fd71e5-2ffc-43bf-b6f5-ca4e00a42c30 genome assembly, chromosome: 1 blastn 83212 1136 0.990316901408451 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Holophaga uncultured Holophaga sp.
27731374 27731374 PRJNA1101048_P_NODE_7444_length_251_cov_0.876404_g7388_i0 PRJNA1101048 7444 251 0.876404 2.19977404 Acidobacteriota bacterium 1978231 Bacteria Bacteria 44.3 0.0113   NR MDM7996132.1 1978231 g7388 i0 41.7 0.717131474103586 60 34 70.5 1 2 178 328 387 MDM7996132.1 MFS transporter [Acidobacteriota bacterium] diamond 180 44.3 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
30415541 30415541 PRJNA1101048_P_NODE_9333_length_242_cov_0.923077_g9277_i0 PRJNA1101048 9333 242 0.923077 2.23384634 Bryobacterales bacterium 2026791 Bacteria Bacteria 42.7 0.0245   NR MCC6538251.1 2026791 g9277 i0 42.6 0.756198347107438 61 28 66.9 3 68 229 36 96 MCC6538251.1 hypothetical protein [Bryobacterales bacterium] diamond 183 42.7 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;